STRINGSTRING
Sps_02633 Sps_02633 Sps_02866 Sps_02866 Sps_02889 Sps_02889 Sps_03141 Sps_03141 Sps_03178 Sps_03178 Sps_03362 Sps_03362 Sps_03664 Sps_03664 Sps_03685 Sps_03685 Sps_03786 Sps_03786 Sps_03886 Sps_03886 Sps_00085 Sps_00085 Sps_00247 Sps_00247 Sps_00312 Sps_00312 Sps_00524 Sps_00524 Sps_03904 Sps_03904 Sps_00614 Sps_00614 Sps_00877 Sps_00877 Sps_00968 Sps_00968 Sps_01305 Sps_01305 Sps_01334 Sps_01334 Sps_05471 Sps_05471 Sps_05376 Sps_05376 Sps_05286 Sps_05286 Sps_05280 Sps_05280 Sps_05098 Sps_05098 Sps_04915 Sps_04915 Sps_04867 Sps_04867 Sps_04770 Sps_04770 Sps_04618 Sps_04618 Sps_04454 Sps_04454 Sps_04418 Sps_04418 Sps_04196 Sps_04196 Sps_04177 Sps_04177 Sps_01788 Sps_01788 Sps_01370 Sps_01370 Sps_02219 Sps_02219 Sps_02402 Sps_02402
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sps_02633PFAM: PAS domain. (736 aa)
Sps_02866PFAM: EAL domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain. (774 aa)
Sps_02889PFAM: HAMP domain; GGDEF domain; PAS domain; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain. (558 aa)
Sps_03141Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PFAM: EAL domain; HAMP domain; GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain. (837 aa)
Sps_03178Diguanylate cyclase/phosphodiesterase; PFAM: EAL domain; GGDEF domain; PAS domain; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain. (859 aa)
Sps_03362Signal transduction histidine kinase, nitrogen specific, NtrB; 'PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain; PAS fold'. (347 aa)
Sps_03664Transcriptional regulator, TyrR; PFAM: ACT domain; Sigma-54 interaction domain. (534 aa)
Sps_03685PAS domain S-box; 'PFAM: HAMP domain; Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain; PAS domain; Hpt domain; PAS fold'; TIGRFAM: PAS domain S-box. (1178 aa)
Sps_03786PAS/PAC sensor signal transduction histidine kinase; 'PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain; PAS domain'. (373 aa)
Sps_03886PAS domain S-box; 'PFAM: HAMP domain; Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain; PAS domain; Hpt domain; PAS fold'; TIGRFAM: PAS domain S-box. (1484 aa)
Sps_00085PFAM: EAL domain; GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain. (811 aa)
Sps_00247PFAM: Methyl-accepting chemotaxis protein (MCP) signalling domain. (1383 aa)
Sps_00312Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PFAM: EAL domain; GGDEF domain; PAS domain; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain. (700 aa)
Sps_00524'PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain; PAS fold'. (1140 aa)
Sps_03904Diguanylate cyclase with PAS/PAC sensor; PFAM: GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain. (334 aa)
Sps_00614PFAM: EAL domain; GGDEF domain; Response regulator receiver domain; TIGRFAM: diguanylate cyclase (GGDEF) domain. (714 aa)
Sps_00877PFAM: GGDEF domain; PAS domain; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain. (431 aa)
Sps_00968Diguanylate cyclase with PAS/PAC sensor; PFAM: GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain. (306 aa)
Sps_01305'PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; GAF domain; His Kinase A (phospho-acceptor) domain; PAS domain; CHASE3 domain; PAS fold'; TIGRFAM: PAS domain S-box. (1846 aa)
Sps_01334PAS domain S-box; 'PFAM: Cache domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold'; TIGRFAM: PAS domain S-box. (883 aa)
Sps_05471Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PFAM: EAL domain; HAMP domain; GGDEF domain; Nitrate and nitrite sensing; PAS domain; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain. (1070 aa)
Sps_05376PFAM: EAL domain; GGDEF domain; PAS domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain. (1463 aa)
Sps_05286Diguanylate cyclase; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain. (320 aa)
Sps_05280Multi-sensor hybrid histidine kinase; 'PFAM: Cache domain; Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain; PAS fold'; TIGRFAM: PAS domain S-box. (1235 aa)
Sps_05098Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor; PFAM: Methyl-accepting chemotaxis protein (MCP) signalling domain; PAS fold; TIGRFAM: PAS domain S-box. (525 aa)
Sps_04915PFAM: EAL domain; GGDEF domain; PAS domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain. (819 aa)
Sps_04867'PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; PAS domain'; TIGRFAM: PAS domain S-box. (492 aa)
Sps_04770'PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS domain'. (422 aa)
Sps_04618'PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain; PAS fold'; TIGRFAM: PAS domain S-box. (897 aa)
Sps_04454'PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain; PAS fold'. (1191 aa)
Sps_04418Signal transduction histidine kinase regulating citrate/malate metabolism; 'PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Sensor_kinase_SpoOB-type, alpha-helical domain; Sensory domain of two-component sensor kinase'. (539 aa)
Sps_04196Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor; PFAM: Methyl-accepting chemotaxis protein (MCP) signalling domain; PAS fold; TIGRFAM: PAS domain S-box. (514 aa)
Sps_04177PFAM: EAL domain; 5TMR of 5TMR-LYT; GGDEF domain; PAS domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain. (1018 aa)
Sps_01788PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein; PFAM: EAL domain; Y_Y_Y domain; GGDEF domain; Two component regulator propeller; PAS domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain. (1436 aa)
Sps_01370PFAM: GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain. (451 aa)
Sps_02219PAS/PAC sensor signal transduction histidine kinase; 'PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain; Domain of unknown function (DUF3329)'; TIGRFAM: phosphate regulon sensor kinase PhoR. (448 aa)
Sps_02402PAS/PAC sensor hybrid histidine kinase; 'PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain; PAS domain'; TIGRFAM: PAS domain S-box. (680 aa)
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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