STRINGSTRING
dadA dadA Sps_00814 Sps_00814 Sps_00911 Sps_00911 hisC hisC Sps_01431 Sps_01431 Sps_03666 Sps_03666 Sps_03940 Sps_03940 Sps_04617 Sps_04617
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
dadAD-amino acid dehydrogenase small subunit; Oxidative deamination of D-amino acids. (417 aa)
Sps_00814PFAM: Aminotransferase class I and II. (401 aa)
Sps_00911PFAM: Aminotransferase class I and II. (397 aa)
hisCPFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. (350 aa)
Sps_01431'PFAM: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal; Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily'; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase. (346 aa)
Sps_03666Phenylalanine 4-hydroxylase; PFAM: Biopterin-dependent aromatic amino acid hydroxylase; 'TIGRFAM: phenylalanine-4-hydroxylase, monomeric form'. (265 aa)
Sps_03940PFAM: Aldehyde dehydrogenase family; Belongs to the aldehyde dehydrogenase family. (508 aa)
Sps_04617Acetyltransferase, ribosomal protein N-acetylase; PFAM: Acetyltransferase (GNAT) family. (177 aa)
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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