STRINGSTRING
Sps_00147 Sps_00147 Sps_00148 Sps_00148 Sps_00149 Sps_00149 Sps_01966 Sps_01966 Sps_03256 Sps_03256 Sps_03257 Sps_03257 Sps_03667 Sps_03667 Sps_03668 Sps_03668 Sps_03696 Sps_03696 Sps_03721 Sps_03721 Sps_03722 Sps_03722 Sps_03723 Sps_03723 Sps_03724 Sps_03724 Sps_03727 Sps_03727 Sps_03729 Sps_03729 Sps_03733 Sps_03733 glmU glmU
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sps_00147dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family. (288 aa)
Sps_00148dTDP-glucose 4,6-dehydratase; PFAM: NAD dependent epimerase/dehydratase family; 'TIGRFAM: dTDP-glucose 4,6-dehydratase'; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily. (356 aa)
Sps_00149dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. (181 aa)
Sps_01966Phosphomannomutase; 'PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I'. (573 aa)
Sps_03256Mannose-1-phosphate guanylyltransferase (GDP); PFAM: Nucleotidyl transferase; Mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; mannose-6-phosphate isomerase, type 2. (479 aa)
Sps_03257Phosphomannomutase; 'PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I'. (480 aa)
Sps_03667UDP-glucose pyrophosphorylase; PFAM: Nucleotidyl transferase; TIGRFAM: UTP--glucose-1-phosphate uridylyltransferase. (307 aa)
Sps_03668UDP-galactose 4-epimerase; PFAM: NAD dependent epimerase/dehydratase family; UDP-glucose 4-epimerase C-term subunit; TIGRFAM: UDP-glucose-4-epimerase GalE; Belongs to the NAD(P)-dependent epimerase/dehydratase family. (337 aa)
Sps_03696Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family. (296 aa)
Sps_03721PFAM: NAD dependent epimerase/dehydratase family. (309 aa)
Sps_03722dTDP-4-dehydrorhamnose 3,5-epimerase-like enzyme. (143 aa)
Sps_03723CDP-glucose 4,6-dehydratase; PFAM: NAD dependent epimerase/dehydratase family; 'TIGRFAM: CDP-glucose 4,6-dehydratase'. (366 aa)
Sps_03724PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate cytidylyltransferase. (256 aa)
Sps_03727Acetyltransferase (isoleucine patch superfamily); PFAM: Bacterial transferase hexapeptide (six repeats). (153 aa)
Sps_03729Glucose-1-phosphate thymidylyltransferase, short form; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family. (315 aa)
Sps_03733dTDP-glucose 4,6-dehydratase; PFAM: NAD dependent epimerase/dehydratase family; 'TIGRFAM: dTDP-glucose 4,6-dehydratase'; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily. (359 aa)
glmUUDP-N-acetylglucosamine pyrophosphorylase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain. (454 aa)
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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