STRINGSTRING
Sps_00194 Sps_00194 Sps_00195 Sps_00195 Sps_00334 Sps_00334 Sps_00335 Sps_00335 Sps_00419 Sps_00419 Sps_00420 Sps_00420 Sps_00639 Sps_00639 Sps_00640 Sps_00640 Sps_00800 Sps_00800 Sps_00830 Sps_00830 Sps_00831 Sps_00831 Sps_01115 Sps_01115 Sps_01636 Sps_01636 Sps_01871 Sps_01871 Sps_01872 Sps_01872 Sps_01873 Sps_01873 Sps_01874 Sps_01874 Sps_01875 Sps_01875 Sps_01916 Sps_01916 Sps_01917 Sps_01917 lpxA lpxA Sps_02173 Sps_02173 Sps_02174 Sps_02174 Sps_02205 Sps_02205 Sps_02206 Sps_02206 Sps_02208 Sps_02208 Sps_02317 Sps_02317 Sps_02543 Sps_02543 Sps_02618 Sps_02618 Sps_03111 Sps_03111 Sps_03112 Sps_03112 Sps_03236 Sps_03236 Sps_03512 Sps_03512 Sps_04149 Sps_04149 Sps_04150 Sps_04150 Sps_04160 Sps_04160 Sps_04321 Sps_04321 Sps_05083 Sps_05083 Sps_05107 Sps_05107
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sps_00194PFAM: HlyD family secretion protein; 'TIGRFAM: RND family efflux transporter, MFP subunit'; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (391 aa)
Sps_00195PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. (1047 aa)
Sps_00334'PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain'. (459 aa)
Sps_00335Two component transcriptional regulator, winged helix family; 'PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal'. (227 aa)
Sps_00419'PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase'. (455 aa)
Sps_00420Two component transcriptional regulator, winged helix family; 'PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal'. (224 aa)
Sps_00639PFAM: HlyD family secretion protein; 'TIGRFAM: RND family efflux transporter, MFP subunit'; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (355 aa)
Sps_00640Cation/multidrug efflux pump; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1030 aa)
Sps_00800Two component transcriptional regulator, winged helix family; 'PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal'. (231 aa)
Sps_00830PFAM: HlyD family secretion protein; 'TIGRFAM: RND family efflux transporter, MFP subunit'; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (407 aa)
Sps_00831PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. (1055 aa)
Sps_01115Putative membrane-associated, metal-dependent hydrolase; PFAM: Sulfatase; Domain of unknown function (DUF1705). (543 aa)
Sps_01636PFAM: HlyD family secretion protein; 'TIGRFAM: RND family efflux transporter, MFP subunit'; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (375 aa)
Sps_01871ABC-type dipeptide transport system, periplasmic component; 'PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle'. (545 aa)
Sps_01872ABC-type antimicrobial peptide transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component. (343 aa)
Sps_01873PFAM: Binding-protein-dependent transport system inner membrane component; N-terminal TM domain of oligopeptide transport permease C. (296 aa)
Sps_01874'PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region'; 'TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain'; Belongs to the ABC transporter superfamily. (337 aa)
Sps_01875ABC-type antimicrobial peptide transport system, ATPase component; 'PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region'. (275 aa)
Sps_01916Cation/multidrug efflux pump; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1019 aa)
Sps_01917PFAM: HlyD family secretion protein; 'TIGRFAM: RND family efflux transporter, MFP subunit'; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (407 aa)
lpxAacyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. (255 aa)
Sps_02173Cation/multidrug efflux pump; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1031 aa)
Sps_02174PFAM: HlyD family secretion protein; 'TIGRFAM: RND family efflux transporter, MFP subunit'; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (424 aa)
Sps_02205Two component transcriptional regulator, winged helix family; 'PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal'. (237 aa)
Sps_02206'PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase'. (444 aa)
Sps_02208PFAM: HlyD family secretion protein; 'TIGRFAM: RND family efflux transporter, MFP subunit'; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (369 aa)
Sps_02317PFAM: HlyD family secretion protein; 'TIGRFAM: RND family efflux transporter, MFP subunit'; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (392 aa)
Sps_02543Hypothetical protein; 'PFAM: LysM domain; L,D-transpeptidase catalytic domain'. (300 aa)
Sps_02618Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (209 aa)
Sps_03111PFAM: HlyD family secretion protein; 'TIGRFAM: RND family efflux transporter, MFP subunit'; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (372 aa)
Sps_03112Cation/multidrug efflux pump; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1029 aa)
Sps_03236PFAM: Thioredoxin. (203 aa)
Sps_03512PFAM: DSBA-like thioredoxin domain. (205 aa)
Sps_04149PFAM: HlyD family secretion protein; 'TIGRFAM: RND family efflux transporter, MFP subunit'; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (390 aa)
Sps_04150PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. (1047 aa)
Sps_04160'PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain'. (430 aa)
Sps_04321Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (198 aa)
Sps_05083PFAM: AMIN domain; N-acetylmuramoyl-L-alanine amidase; LysM domain. (440 aa)
Sps_05107PFAM: Outer membrane efflux protein; 'TIGRFAM: type I secretion outer membrane protein, TolC family'. (448 aa)
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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