STRINGSTRING
dnaA dnaA Sps_00089 Sps_00089 Sps_00090 Sps_00090 Sps_00096 Sps_00096 Sps_00110 Sps_00110 Sps_00118 Sps_00118 Sps_00231 Sps_00231 Sps_00232 Sps_00232 cheB cheB Sps_00246 Sps_00246 Sps_00247 Sps_00247 Sps_00248 Sps_00248 Sps_00249 Sps_00249 Sps_00250 Sps_00250 Sps_00255 Sps_00255 Sps_00276 Sps_00276 Sps_00277 Sps_00277 Sps_00334 Sps_00334 Sps_00335 Sps_00335 Sps_00419 Sps_00419 Sps_00420 Sps_00420 Sps_00573 Sps_00573 Sps_00607 Sps_00607 Sps_00672 Sps_00672 Sps_00719 Sps_00719 Sps_00800 Sps_00800 Sps_00922 Sps_00922 Sps_00923 Sps_00923 Sps_00924 Sps_00924 Sps_00925 Sps_00925 Sps_01019 Sps_01019 Sps_01020 Sps_01020 Sps_01213 Sps_01213 Sps_01277 Sps_01277 Sps_01298 Sps_01298 Sps_01303 Sps_01303 Sps_01304 Sps_01304 Sps_01333 Sps_01333 Sps_01378 Sps_01378 Sps_01421 Sps_01421 Sps_01501 Sps_01501 Sps_01520 Sps_01520 Sps_01599 Sps_01599 Sps_01709 Sps_01709 Sps_01748 Sps_01748 Sps_01810 Sps_01810 Sps_02046 Sps_02046 Sps_02101 Sps_02101 glnD glnD Sps_02205 Sps_02205 Sps_02206 Sps_02206 Sps_02214 Sps_02214 Sps_02218 Sps_02218 Sps_02219 Sps_02219 Sps_02220 Sps_02220 Sps_02243 Sps_02243 Sps_02293 Sps_02293 Sps_02313 Sps_02313 Sps_02323 Sps_02323 Sps_02324 Sps_02324 glsA glsA Sps_02374 Sps_02374 Sps_02560 Sps_02560 Sps_02600 Sps_02600 Sps_02601 Sps_02601 Sps_02613 Sps_02613 Sps_02700 Sps_02700 glnD-2 glnD-2 Sps_02735 Sps_02735 Sps_02736 Sps_02736 Sps_02737 Sps_02737 Sps_02755 Sps_02755 Sps_02811 Sps_02811 Sps_02868 Sps_02868 Sps_02901 Sps_02901 Sps_02991 Sps_02991 Sps_02992 Sps_02992 Sps_03073 Sps_03073 Sps_03074 Sps_03074 Sps_03075 Sps_03075 Sps_03076 Sps_03076 Sps_03198 Sps_03198 Sps_03297 Sps_03297 Sps_03324 Sps_03324 Sps_03325 Sps_03325 Sps_03358 Sps_03358 Sps_03362 Sps_03362 ntrC ntrC Sps_03500 Sps_03500 Sps_03624 Sps_03624 Sps_03632 Sps_03632 Sps_03654 Sps_03654 Sps_03655 Sps_03655 Sps_03656 Sps_03656 Sps_03657 Sps_03657 Sps_03658 Sps_03658 Sps_03684 Sps_03684 Sps_03746 Sps_03746 Sps_03757 Sps_03757 Sps_03758 Sps_03758 cheB-2 cheB-2 Sps_03762 Sps_03762 Sps_03764 Sps_03764 fliA fliA Sps_03785 Sps_03785 Sps_03786 Sps_03786 Sps_03787 Sps_03787 Sps_03792 Sps_03792 Sps_03793 Sps_03793 Sps_03806 Sps_03806 Sps_03807 Sps_03807 Sps_03809 Sps_03809 Sps_03821 Sps_03821 Sps_03823 Sps_03823 Sps_03824 Sps_03824 Sps_03928 Sps_03928 Sps_03944 Sps_03944 Sps_04080 Sps_04080 csrA csrA Sps_04112 Sps_04112 Sps_04154 Sps_04154 Sps_04160 Sps_04160 Sps_04196 Sps_04196 Sps_04209 Sps_04209 Sps_04210 Sps_04210 torD torD Sps_04216 Sps_04216 Sps_04219 Sps_04219 Sps_04264 Sps_04264 Sps_04367 Sps_04367 Sps_04402 Sps_04402 Sps_04419 Sps_04419 Sps_04420 Sps_04420 Sps_04421 Sps_04421 maeA maeA Sps_04440 Sps_04440 Sps_04463 Sps_04463 Sps_04647 Sps_04647 Sps_04770 Sps_04770 Sps_04946 Sps_04946 Sps_04949 Sps_04949 Sps_04951 Sps_04951 Sps_05032 Sps_05032 Sps_05040 Sps_05040 Sps_05044 Sps_05044 Sps_05061 Sps_05061 Sps_05074 Sps_05074 Sps_05075 Sps_05075 Sps_05076 Sps_05076 Sps_05098 Sps_05098 Sps_05107 Sps_05107 Sps_05208 Sps_05208 Sps_05309 Sps_05309 Sps_05384 Sps_05384 Sps_05503 Sps_05503 Sps_05613 Sps_05613 Sps_05614 Sps_05614 Sps_05618 Sps_05618 Sps_05643 Sps_05643
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
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gene neighborhood
gene fusions
gene co-occurrence
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co-expression
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dnaAChromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. (462 aa)
Sps_00089PFAM: MotA/TolQ/ExbB proton channel family; TIGRFAM: flagellar motor stator protein MotA. (285 aa)
Sps_00090RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG; 'PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2'; 'TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family'. (240 aa)
Sps_00096Flagellin/flagellar hook associated protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (284 aa)
Sps_00110'PFAM: Anti-sigma-28 factor, FlgM'; TIGRFAM: flagellar biosynthesis anti-sigma factor FlgM. (94 aa)
Sps_00118Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains; 'PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain'. (433 aa)
Sps_00231'PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain'. (436 aa)
Sps_00232Two component transcriptional regulator, winged helix family; 'PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal'. (241 aa)
cheBChemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (346 aa)
Sps_00246Methylase of chemotaxis methyl-accepting protein; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP. (312 aa)
Sps_00247PFAM: Methyl-accepting chemotaxis protein (MCP) signalling domain. (1383 aa)
Sps_00248Chemotaxis signal transduction protein; PFAM: CheW-like domain. (191 aa)
Sps_00249CheA signal transduction histidine kinase; 'PFAM: CheW-like domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Signal transducing histidine kinase, homodimeric domain; Hpt domain'. (701 aa)
Sps_00250PFAM: Response regulator receiver domain. (120 aa)
Sps_00255PFAM: Cytochrome oxidase assembly protein. (327 aa)
Sps_00276PFAM: AcrB/AcrD/AcrF family; 'TIGRFAM: heavy metal efflux pump, CzcA family'; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1043 aa)
Sps_00277PFAM: HlyD family secretion protein; 'TIGRFAM: RND family efflux transporter, MFP subunit'; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (503 aa)
Sps_00334'PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain'. (459 aa)
Sps_00335Two component transcriptional regulator, winged helix family; 'PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal'. (227 aa)
Sps_00419'PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase'. (455 aa)
Sps_00420Two component transcriptional regulator, winged helix family; 'PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal'. (224 aa)
Sps_00573Penicillin-binding protein, beta-lactamase class C; PFAM: Beta-lactamase. (392 aa)
Sps_00607Two component transcriptional regulator, LuxR family; 'PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family'. (214 aa)
Sps_00672PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signalling domain. (497 aa)
Sps_00719Bacterial flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (228 aa)
Sps_00800Two component transcriptional regulator, winged helix family; 'PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal'. (231 aa)
Sps_00922Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. (322 aa)
Sps_00923PFAM: Cbb3-type cytochrome oxidase component FixQ. (54 aa)
Sps_00924'PFAM: Cytochrome C oxidase, mono-heme subunit/FixO'; 'TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II'. (208 aa)
Sps_00925PFAM: Cytochrome C and Quinol oxidase polypeptide I; 'TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I'; Belongs to the heme-copper respiratory oxidase family. (475 aa)
Sps_01019'PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain; Hpt domain'. (929 aa)
Sps_01020Two component transcriptional regulator, LuxR family; 'PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family'. (214 aa)
Sps_01213Methyl-accepting chemotaxis sensory transducer with Cache sensor; PFAM: HAMP domain; Cache domain; Methyl-accepting chemotaxis protein (MCP) signalling domain. (548 aa)
Sps_01277PFAM: Short chain fatty acid transporter; TIGRFAM: TIGR00366 family protein. (439 aa)
Sps_01298'PFAM: Glutamine synthetase, catalytic domain'. (459 aa)
Sps_01303PFAM: CheB methylesterase. (199 aa)
Sps_01304MCP methyltransferase, CheR-type; 'PFAM: CheR methyltransferase, SAM binding domain; CheR methyltransferase, all-alpha domain'. (276 aa)
Sps_01333PFAM: Methyl-accepting chemotaxis protein (MCP) signalling domain. (500 aa)
Sps_01378PFAM: Low molecular weight phosphotyrosine protein phosphatase. (158 aa)
Sps_01421PFAM: CheW-like domain; Response regulator receiver domain. (313 aa)
Sps_01501'PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal'. (232 aa)
Sps_01520PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signalling domain. (462 aa)
Sps_01599Hypothetical protein; PFAM: Tripartite tricarboxylate transporter family receptor. (367 aa)
Sps_01709PFAM: Methyl-accepting chemotaxis protein (MCP) signalling domain. (482 aa)
Sps_01748Methyl-accepting chemotaxis sensory transducer with Cache sensor; PFAM: HAMP domain; Cache domain; Methyl-accepting chemotaxis protein (MCP) signalling domain. (623 aa)
Sps_01810PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signalling domain. (572 aa)
Sps_02046acetyl-CoA acetyltransferase; 'PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain'; TIGRFAM: acetyl-CoA acetyltransferases; Belongs to the thiolase-like superfamily. Thiolase family. (396 aa)
Sps_02101Hypothetical protein. (128 aa)
glnDUTP--GlnB (protein PII) uridylyltransferase, GlnD; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen metabolism. (857 aa)
Sps_02205Two component transcriptional regulator, winged helix family; 'PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal'. (237 aa)
Sps_02206'PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase'. (444 aa)
Sps_02214PFAM: Methyl-accepting chemotaxis protein (MCP) signalling domain. (299 aa)
Sps_02218Phosphate ABC transporter substrate-binding protein, PhoT family; PFAM: PBP superfamily domain; TIGRFAM: phosphate binding protein. (323 aa)
Sps_02219PAS/PAC sensor signal transduction histidine kinase; 'PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain; Domain of unknown function (DUF3329)'; TIGRFAM: phosphate regulon sensor kinase PhoR. (448 aa)
Sps_02220Two component transcriptional regulator, winged helix family; 'PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal'; TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB. (229 aa)
Sps_02243Flagellar motor component; PFAM: MotA/TolQ/ExbB proton channel family. (255 aa)
Sps_02293Methyl-accepting chemotaxis sensory transducer with Cache sensor; PFAM: HAMP domain; Cache domain; Methyl-accepting chemotaxis protein (MCP) signalling domain. (721 aa)
Sps_02313Methyl-accepting chemotaxis sensory transducer with Cache sensor; PFAM: HAMP domain; Cache domain; Methyl-accepting chemotaxis protein (MCP) signalling domain. (626 aa)
Sps_02323PFAM: Alkaline phosphatase; Belongs to the alkaline phosphatase family. (499 aa)
Sps_02324PFAM: Alkaline phosphatase; Belongs to the alkaline phosphatase family. (531 aa)
glsAL-glutaminase; PFAM: Glutaminase; TIGRFAM: glutaminase A; Belongs to the glutaminase family. (304 aa)
Sps_02374PFAM: Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. (112 aa)
Sps_02560'PFAM: Glutamine synthetase, catalytic domain'. (449 aa)
Sps_02600Signal transduction histidine kinase, nitrate/nitrite-specific, NarQ; 'PFAM: Histidine kinase; HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Type IV pili methyl-accepting chemotaxis transducer N-term'. (567 aa)
Sps_02601Two component transcriptional regulator, LuxR family; 'PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family'. (209 aa)
Sps_02613PFAM: PhoD-like phosphatase. (590 aa)
Sps_02700Methyl-accepting chemotaxis sensory transducer with TarH sensor; PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signalling domain; Tar ligand binding domain homologue. (557 aa)
glnD-2UTP--GlnB (protein PII) uridylyltransferase, GlnD; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen metabolism. (867 aa)
Sps_02735Cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein; PFAM: Bacterial Cytochrome Ubiquinol Oxidase. (534 aa)
Sps_02736Cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein; PFAM: Cytochrome oxidase subunit II; 'TIGRFAM: cytochrome d oxidase, subunit II (cydB)'. (379 aa)
Sps_02737PFAM: Membrane bound YbgT-like protein; TIGRFAM: cyd operon protein YbgT. (41 aa)
Sps_02755PFAM: Response regulator receiver domain. (120 aa)
Sps_02811PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signalling domain. (695 aa)
Sps_02868PFAM: Response regulator receiver domain. (118 aa)
Sps_02901PFAM: Alkaline phosphatase; Belongs to the alkaline phosphatase family. (450 aa)
Sps_02991'PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family'. (179 aa)
Sps_02992'PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase'. (416 aa)
Sps_03073Succinate dehydrogenase subunit B; PFAM: 2Fe-2S iron-sulfur cluster binding domain; 4Fe-4S dicluster domain; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (247 aa)
Sps_03074Succinate dehydrogenase subunit A; PFAM: FAD binding domain; Fumarate reductase flavoprotein C-term; 'TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup'. (670 aa)
Sps_03075PFAM: Succinate dehydrogenase/Fumarate reductase transmembrane subunit. (242 aa)
Sps_03076PFAM: Succinate dehydrogenase/Fumarate reductase transmembrane subunit. (243 aa)
Sps_03198Chemotaxis signal transduction protein; PFAM: CheW-like domain; Response regulator receiver domain. (326 aa)
Sps_03297cAMP-binding protein; PFAM: Crp-like helix-turn-helix domain; Cyclic nucleotide-binding domain. (236 aa)
Sps_03324'PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase'. (365 aa)
Sps_03325Two component transcriptional regulator, LuxR family; 'PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family'. (199 aa)
Sps_03358'PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain'; 'TIGRFAM: glutamine synthetase, type I'. (469 aa)
Sps_03362Signal transduction histidine kinase, nitrogen specific, NtrB; 'PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain; PAS fold'. (347 aa)
ntrCNitrogen metabolism transcriptional regulator, NtrC, Fis family; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. (469 aa)
Sps_03500Chemotaxis signal transduction protein; PFAM: CheW-like domain. (171 aa)
Sps_03624PFAM: Polysaccharide biosynthesis/export protein. (357 aa)
Sps_03632Chemotaxis signal transduction protein; PFAM: CheW-like domain; Response regulator receiver domain. (298 aa)
Sps_03654'PFAM: Bacterial extracellular solute-binding protein, family 7'; 'TIGRFAM: tripartite ATP-independent periplasmic transporter solute receptor, DctP family'. (343 aa)
Sps_03655TRAP-type C4-dicarboxylate transport system, small permease component; 'PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component'. (222 aa)
Sps_03656TRAP-type C4-dicarboxylate transport system, large permease component; PFAM: DctM-like transporters; 'TIGRFAM: TRAP transporter, DctM subunit'. (465 aa)
Sps_03657Signal transduction histidine kinase regulating C4-dicarboxylate transport system; 'PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain'. (586 aa)
Sps_03658Two component, sigma54 specific, transcriptional regulator, Fis family; 'PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain'. (459 aa)
Sps_03684Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains; 'PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain'. (500 aa)
Sps_03746PFAM: Capsule biosynthesis GfcC; Polysaccharide biosynthesis/export protein; SLBB domain; JUMPstart RNA. (919 aa)
Sps_03757PFAM: CheW-like domain. (163 aa)
Sps_03758PFAM: CheW-like domain. (333 aa)
cheB-2Response regulator receiver modulated CheB methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (372 aa)
Sps_03762Chemotaxis protein histidine kinase-like protein; 'PFAM: CheW-like domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Signal transducing histidine kinase, homodimeric domain; Hpt domain'. (723 aa)
Sps_03764PFAM: Response regulator receiver domain. (123 aa)
fliARNA polymerase, sigma 28 subunit, SigD/FliA/WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily. (239 aa)
Sps_03785Two component, sigma54 specific, transcriptional regulator, Fis family; 'PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain'. (453 aa)
Sps_03786PAS/PAC sensor signal transduction histidine kinase; 'PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain; PAS domain'. (373 aa)
Sps_03787Sigma54 specific transcriptional regulator, Fis family; 'PFAM: Flagellar regulatory protein FleQ; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain'. (477 aa)
Sps_03792Flagellin/flagellar hook associated protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (480 aa)
Sps_03793Flagellin/flagellar hook associated protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (485 aa)
Sps_03806MCP methyltransferase, CheR-type; 'PFAM: CheR methyltransferase, SAM binding domain; CheR methyltransferase, all-alpha domain'. (277 aa)
Sps_03807PFAM: CheW-like domain; Response regulator receiver domain. (306 aa)
Sps_03809'PFAM: Anti-sigma-28 factor, FlgM'; TIGRFAM: flagellar biosynthesis anti-sigma factor FlgM. (106 aa)
Sps_03821PFAM: Cache domain; Methyl-accepting chemotaxis protein (MCP) signalling domain. (667 aa)
Sps_03823Cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein; PFAM: Cytochrome oxidase subunit II; 'TIGRFAM: cytochrome d oxidase, subunit II (cydB)'. (379 aa)
Sps_03824Cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein; PFAM: Bacterial Cytochrome Ubiquinol Oxidase. (518 aa)
Sps_03928CheY-like receiver domain-containing protein; PFAM: Response regulator receiver domain. (134 aa)
Sps_03944Methyl-accepting chemotaxis sensory transducer with Cache sensor; PFAM: HAMP domain; Cache domain; Methyl-accepting chemotaxis protein (MCP) signalling domain; Vibrio chemotaxis protein N terminus. (622 aa)
Sps_04080'PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain'. (517 aa)
csrACarbon storage regulator, CsrA; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). (65 aa)
Sps_04112Hpt sensor hybrid histidine kinase; 'PFAM: HAMP domain; Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain; Uncharacterized signal transduction histidine kinase domain (DUF2222); Hpt domain'. (937 aa)
Sps_04154'PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal'. (228 aa)
Sps_04160'PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain'. (430 aa)
Sps_04196Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor; PFAM: Methyl-accepting chemotaxis protein (MCP) signalling domain; PAS fold; TIGRFAM: PAS domain S-box. (514 aa)
Sps_04209Hypothetical protein; 'PFAM: NapC/NirT cytochrome c family, N-terminal region'. (230 aa)
Sps_04210trimethylamine-N-oxide reductase TorA; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; TIGRFAM: molybdopterin guanine dinucleotide-containing S/N-oxide reductases; trimethylamine-N-oxide reductase TorA; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (830 aa)
torDTat proofreading chaperone TorD; Involved in the biogenesis of TorA. Acts on TorA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; Belongs to the TorD/DmsD family. TorD subfamily. (232 aa)
Sps_04216'PFAM: HAMP domain; Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain; Hpt domain'; TIGRFAM: TMAO reductase sytem sensor TorS. (995 aa)
Sps_04219Two component transcriptional regulator, winged helix family; 'PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal'. (244 aa)
Sps_04264PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signalling domain. (772 aa)
Sps_04367Methyl-accepting chemotaxis sensory transducer with Cache sensor; PFAM: HAMP domain; Cache domain; Methyl-accepting chemotaxis protein (MCP) signalling domain; Vibrio chemotaxis protein N terminus. (622 aa)
Sps_04402PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signalling domain. (620 aa)
Sps_04419Hypothetical protein; PFAM: Tripartite tricarboxylate transporter TctA family. (511 aa)
Sps_04420PFAM: Tripartite tricarboxylate transporter TctB family. (162 aa)
Sps_04421Hypothetical protein; PFAM: Tripartite tricarboxylate transporter family receptor. (327 aa)
maeA'PFAM: Malic enzyme, NAD binding domain; Malic enzyme, N-terminal domain'. (562 aa)
Sps_04440Methyl-accepting chemotaxis sensory transducer with Cache sensor; PFAM: Cache domain; Methyl-accepting chemotaxis protein (MCP) signalling domain. (452 aa)
Sps_04463DNA-binding protein with HTH domain; 'PFAM: Bacterial regulatory proteins, luxR family; Autoinducer binding domain'. (250 aa)
Sps_04647PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signalling domain. (675 aa)
Sps_04770'PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS domain'. (422 aa)
Sps_04946Two component transcriptional regulator, winged helix family; 'PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal'. (239 aa)
Sps_04949PFAM: FAD binding domain; Cytochrome c3; TIGRFAM: flavocytochrome c; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (595 aa)
Sps_04951Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains; 'PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain'. (460 aa)
Sps_05032PFAM: FecR protein. (359 aa)
Sps_05040Cytochrome c, mono- and diheme variants family; 'PFAM: Cytochrome C oxidase, cbb3-type, subunit III'. (218 aa)
Sps_05044Methyl-accepting chemotaxis sensory transducer with Cache sensor; PFAM: HAMP domain; Cache domain; Methyl-accepting chemotaxis protein (MCP) signalling domain. (640 aa)
Sps_05061'PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain'. (211 aa)
Sps_05074PFAM: Cytochrome C1 family. (240 aa)
Sps_05075Cytochrome b subunit of the bc complex; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (404 aa)
Sps_05076Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (196 aa)
Sps_05098Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor; PFAM: Methyl-accepting chemotaxis protein (MCP) signalling domain; PAS fold; TIGRFAM: PAS domain S-box. (525 aa)
Sps_05107PFAM: Outer membrane efflux protein; 'TIGRFAM: type I secretion outer membrane protein, TolC family'. (448 aa)
Sps_05208RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (492 aa)
Sps_05309PFAM: Response regulator receiver domain. (265 aa)
Sps_05384PFAM: Type IV pilin N-term methylation site GFxxxE; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (141 aa)
Sps_05503PFAM: HAMP domain; Cache domain; Methyl-accepting chemotaxis protein (MCP) signalling domain. (632 aa)
Sps_05613ABC-type Na+ transport system, ATPase component; PFAM: ABC transporter. (244 aa)
Sps_05614ABC-type Na+ efflux pump, permease component; PFAM: ABC-2 family transporter protein. (387 aa)
Sps_05618PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signalling domain. (552 aa)
Sps_05643Phosphate ABC transporter substrate-binding protein, PhoT family; PFAM: PBP superfamily domain; TIGRFAM: phosphate binding protein. (269 aa)
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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