(11 nodes) Pyruvate metabolism network (Aspergillus nidulans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ANIA_02098	Acylphosphatase. (112 aa)
	aldA	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (497 aa)
	facA	Acetyl-coenzyme A synthetase; Belongs to the ATP-dependent AMP-binding enzyme family. (670 aa)
	ANIA_09034	Aldehyde dehydrogenase ALDH (AFU_orthologue AFUA_8G02310); Belongs to the aldehyde dehydrogenase family. (511 aa)
	ANIA_08744	FMN dependent dehydrogenase, putative (AFU_orthologue AFUA_6G02720). (403 aa)
	ANIA_08587	FMN dependent dehydrogenase, putative (AFU_orthologue AFUA_1G00500). (400 aa)
	ANIA_05833	Propionate-CoA ligase (Eurofung). (694 aa)
	AN4914	Probable acetate kinase. (420 aa)
	ANIA_04126	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family. (504 aa)
	ANIA_01689	Aldehyde dehydrogenase family (Eurofung); Belongs to the aldehyde dehydrogenase family. (501 aa)
	ANIA_01547	AcetylCoA_hyd_C domain-containing protein. (525 aa)

Your Current Organism:

Aspergillus nidulans

NCBI taxonomy Id: 227321
Other names: A. nidulans FGSC A4, Aspergillus nidulans FGSC A4, Emericella nidulans FGSC A4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AN4914	ANIA_01547	Q5B3G6	Q5BD33	Probable acetate kinase.	AcetylCoA_hyd_C domain-containing protein.	0.900
AN4914	ANIA_01689	Q5B3G6	Q5BCP1	Probable acetate kinase.	Aldehyde dehydrogenase family (Eurofung); Belongs to the aldehyde dehydrogenase family.	0.901
AN4914	ANIA_02098	Q5B3G6	C8VLX7	Probable acetate kinase.	Acylphosphatase.	0.900
AN4914	ANIA_04126	Q5B3G6	Q5B5Q4	Probable acetate kinase.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.901
AN4914	ANIA_05833	Q5B3G6	Q5B0U7	Probable acetate kinase.	Propionate-CoA ligase (Eurofung).	0.901
AN4914	ANIA_08587	Q5B3G6	Q5ASZ3	Probable acetate kinase.	FMN dependent dehydrogenase, putative (AFU_orthologue AFUA_1G00500).	0.901
AN4914	ANIA_08744	Q5B3G6	Q5ASI6	Probable acetate kinase.	FMN dependent dehydrogenase, putative (AFU_orthologue AFUA_6G02720).	0.901
AN4914	ANIA_09034	Q5B3G6	Q5ARP6	Probable acetate kinase.	Aldehyde dehydrogenase ALDH (AFU_orthologue AFUA_8G02310); Belongs to the aldehyde dehydrogenase family.	0.902
AN4914	aldA	Q5B3G6	P08157	Probable acetate kinase.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.919
AN4914	facA	Q5B3G6	P16928	Probable acetate kinase.	Acetyl-coenzyme A synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.	0.927
ANIA_01547	AN4914	Q5BD33	Q5B3G6	AcetylCoA_hyd_C domain-containing protein.	Probable acetate kinase.	0.900
ANIA_01547	ANIA_01689	Q5BD33	Q5BCP1	AcetylCoA_hyd_C domain-containing protein.	Aldehyde dehydrogenase family (Eurofung); Belongs to the aldehyde dehydrogenase family.	0.938
ANIA_01547	ANIA_02098	Q5BD33	C8VLX7	AcetylCoA_hyd_C domain-containing protein.	Acylphosphatase.	0.900
ANIA_01547	ANIA_04126	Q5BD33	Q5B5Q4	AcetylCoA_hyd_C domain-containing protein.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.938
ANIA_01547	ANIA_05833	Q5BD33	Q5B0U7	AcetylCoA_hyd_C domain-containing protein.	Propionate-CoA ligase (Eurofung).	0.465
ANIA_01547	ANIA_08587	Q5BD33	Q5ASZ3	AcetylCoA_hyd_C domain-containing protein.	FMN dependent dehydrogenase, putative (AFU_orthologue AFUA_1G00500).	0.900
ANIA_01547	ANIA_08744	Q5BD33	Q5ASI6	AcetylCoA_hyd_C domain-containing protein.	FMN dependent dehydrogenase, putative (AFU_orthologue AFUA_6G02720).	0.900
ANIA_01547	ANIA_09034	Q5BD33	Q5ARP6	AcetylCoA_hyd_C domain-containing protein.	Aldehyde dehydrogenase ALDH (AFU_orthologue AFUA_8G02310); Belongs to the aldehyde dehydrogenase family.	0.938
ANIA_01547	aldA	Q5BD33	P08157	AcetylCoA_hyd_C domain-containing protein.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.925
ANIA_01547	facA	Q5BD33	P16928	AcetylCoA_hyd_C domain-containing protein.	Acetyl-coenzyme A synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.	0.944