9 items (Aspergillus nidulans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ANIA_01796	Membrane protein (Eurofung). (668 aa)
	ANIA_01643	Lignostilbene dioxygenase, putative (AFU_orthologue AFUA_4G01500). (480 aa)
	ANIA_04495	Uncharacterized protein. (568 aa)
	ANIA_04548	F-box domain protein (AFU_orthologue AFUA_2G02570). (302 aa)
	ANIA_07062	Uncharacterized protein. (555 aa)
	ANIA_08844	RING-box protein 1 (Broad). (116 aa)
	ANIA_04872	Ubiquitin-like domain-containing protein. (154 aa)
	ANIA_04324	Putative b-zip transcription factor (Eurofung). (263 aa)
	ANIA_05815	Putative aurora kinase (Eurofung); Belongs to the protein kinase superfamily. (391 aa)

Your Current Organism:

Aspergillus nidulans

NCBI taxonomy Id: 227321
Other names: A. nidulans FGSC A4, Aspergillus nidulans FGSC A4, Emericella nidulans FGSC A4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANIA_04324	ANIA_05815	C8V968	C8V088	Putative b-zip transcription factor (Eurofung).	Putative aurora kinase (Eurofung); Belongs to the protein kinase superfamily.	0.623
ANIA_04324	ANIA_08844	C8V968	Q5AS86	Putative b-zip transcription factor (Eurofung).	RING-box protein 1 (Broad).	0.848
ANIA_04872	ANIA_05815	G5EB17	C8V088	Ubiquitin-like domain-containing protein.	Putative aurora kinase (Eurofung); Belongs to the protein kinase superfamily.	0.623
ANIA_04872	ANIA_08844	G5EB17	Q5AS86	Ubiquitin-like domain-containing protein.	RING-box protein 1 (Broad).	0.848
ANIA_05815	ANIA_04324	C8V088	C8V968	Putative aurora kinase (Eurofung); Belongs to the protein kinase superfamily.	Putative b-zip transcription factor (Eurofung).	0.623
ANIA_05815	ANIA_04872	C8V088	G5EB17	Putative aurora kinase (Eurofung); Belongs to the protein kinase superfamily.	Ubiquitin-like domain-containing protein.	0.623
ANIA_05815	ANIA_08844	C8V088	Q5AS86	Putative aurora kinase (Eurofung); Belongs to the protein kinase superfamily.	RING-box protein 1 (Broad).	0.671
ANIA_08844	ANIA_04324	Q5AS86	C8V968	RING-box protein 1 (Broad).	Putative b-zip transcription factor (Eurofung).	0.848
ANIA_08844	ANIA_04872	Q5AS86	G5EB17	RING-box protein 1 (Broad).	Ubiquitin-like domain-containing protein.	0.848
ANIA_08844	ANIA_05815	Q5AS86	C8V088	RING-box protein 1 (Broad).	Putative aurora kinase (Eurofung); Belongs to the protein kinase superfamily.	0.671