18 items (Aspergillus nidulans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rad5	DNA repair protein rad5; Probable helicase, member of the UBC2/RAD6 epistasis group. Functions with DNA repair protein RAD18 in error-free postreplication DNA repair. Involved in the maintenance of wild-type rates of instability of simple repetitive sequences such as poly(GT) repeats. Seems to be involved in maintaining a balance which acts in favor of error-prone non-homologous joining during DNA double-strand breaks repairs (By similarity). (1202 aa)
	ANIA_10794	Single-stranded DNA-dependent ATPase (Eurofung). (1170 aa)
	ANIA_04324	Putative b-zip transcription factor (Eurofung). (263 aa)
	ANIA_11128	RNA polymerase II transcription elongation factor (Ctr9), putative (AFU_orthologue AFUA_5G05870). (1027 aa)
	ANIA_10878	Golgi membrane protein, putative (AFU_orthologue AFUA_4G04630). (312 aa)
	ANIA_10707	ATP-dependent DNA helicase (Eurofung). (1415 aa)
	ANIA_10373	Uncharacterized protein. (600 aa)
	ANIA_04872	Ubiquitin-like domain-containing protein. (154 aa)
	htbA	Histone H2B; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (140 aa)
	ANIA_07538	ATP-dependent DNA helicase (Eurofung). (1132 aa)
	ANIA_06802	Uncharacterized protein. (433 aa)
	ANIA_06333	Uncharacterized protein. (476 aa)
	ANIA_06076	SNF2 family helicase, putative (AFU_orthologue AFUA_2G09120). (2379 aa)
	ANIA_05483	ATP-dependent DNA helicase (Eurofung). (1184 aa)
	ANIA_04570	RNA polymerase II transcription elongation factor Rtf1p, putative (AFU_orthologue AFUA_2G01900). (600 aa)
	ANIA_02256	SNF2 family helicase, putative (AFU_orthologue AFUA_5G06590). (972 aa)
	ANIA_01961	SNF2 family helicase, putative (AFU_orthologue AFUA_4G10830). (1502 aa)
	ANIA_01249	Formin binding protein (FNB3), putative (AFU_orthologue AFUA_1G10320). (798 aa)

Your Current Organism:

Aspergillus nidulans

NCBI taxonomy Id: 227321
Other names: A. nidulans FGSC A4, Aspergillus nidulans FGSC A4, Emericella nidulans FGSC A4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANIA_01249	ANIA_04324	Q5BDY0	C8V968	Formin binding protein (FNB3), putative (AFU_orthologue AFUA_1G10320).	Putative b-zip transcription factor (Eurofung).	0.537
ANIA_01249	ANIA_04872	Q5BDY0	G5EB17	Formin binding protein (FNB3), putative (AFU_orthologue AFUA_1G10320).	Ubiquitin-like domain-containing protein.	0.537
ANIA_01249	ANIA_10373	Q5BDY0	C8VJB5	Formin binding protein (FNB3), putative (AFU_orthologue AFUA_1G10320).	Uncharacterized protein.	0.556
ANIA_01249	ANIA_11128	Q5BDY0	C8V9J3	Formin binding protein (FNB3), putative (AFU_orthologue AFUA_1G10320).	RNA polymerase II transcription elongation factor (Ctr9), putative (AFU_orthologue AFUA_5G05870).	0.655
ANIA_01249	htbA	Q5BDY0	P23754	Formin binding protein (FNB3), putative (AFU_orthologue AFUA_1G10320).	Histone H2B; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.631
ANIA_04324	ANIA_01249	C8V968	Q5BDY0	Putative b-zip transcription factor (Eurofung).	Formin binding protein (FNB3), putative (AFU_orthologue AFUA_1G10320).	0.537
ANIA_04324	ANIA_06076	C8V968	Q5B054	Putative b-zip transcription factor (Eurofung).	SNF2 family helicase, putative (AFU_orthologue AFUA_2G09120).	0.493
ANIA_04324	ANIA_10707	C8V968	C8VFF9	Putative b-zip transcription factor (Eurofung).	ATP-dependent DNA helicase (Eurofung).	0.521
ANIA_04324	ANIA_11128	C8V968	C8V9J3	Putative b-zip transcription factor (Eurofung).	RNA polymerase II transcription elongation factor (Ctr9), putative (AFU_orthologue AFUA_5G05870).	0.614
ANIA_04324	htbA	C8V968	P23754	Putative b-zip transcription factor (Eurofung).	Histone H2B; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.799
ANIA_04570	ANIA_10373	Q5B4G0	C8VJB5	RNA polymerase II transcription elongation factor Rtf1p, putative (AFU_orthologue AFUA_2G01900).	Uncharacterized protein.	0.933
ANIA_04570	ANIA_11128	Q5B4G0	C8V9J3	RNA polymerase II transcription elongation factor Rtf1p, putative (AFU_orthologue AFUA_2G01900).	RNA polymerase II transcription elongation factor (Ctr9), putative (AFU_orthologue AFUA_5G05870).	0.999
ANIA_04570	htbA	Q5B4G0	P23754	RNA polymerase II transcription elongation factor Rtf1p, putative (AFU_orthologue AFUA_2G01900).	Histone H2B; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.941
ANIA_04872	ANIA_01249	G5EB17	Q5BDY0	Ubiquitin-like domain-containing protein.	Formin binding protein (FNB3), putative (AFU_orthologue AFUA_1G10320).	0.537
ANIA_04872	ANIA_06076	G5EB17	Q5B054	Ubiquitin-like domain-containing protein.	SNF2 family helicase, putative (AFU_orthologue AFUA_2G09120).	0.493
ANIA_04872	ANIA_10707	G5EB17	C8VFF9	Ubiquitin-like domain-containing protein.	ATP-dependent DNA helicase (Eurofung).	0.521
ANIA_04872	ANIA_11128	G5EB17	C8V9J3	Ubiquitin-like domain-containing protein.	RNA polymerase II transcription elongation factor (Ctr9), putative (AFU_orthologue AFUA_5G05870).	0.614
ANIA_04872	htbA	G5EB17	P23754	Ubiquitin-like domain-containing protein.	Histone H2B; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.799
ANIA_06076	ANIA_04324	Q5B054	C8V968	SNF2 family helicase, putative (AFU_orthologue AFUA_2G09120).	Putative b-zip transcription factor (Eurofung).	0.493
ANIA_06076	ANIA_04872	Q5B054	G5EB17	SNF2 family helicase, putative (AFU_orthologue AFUA_2G09120).	Ubiquitin-like domain-containing protein.	0.493