STRINGSTRING
HNE_0021 HNE_0021 HNE_0022 HNE_0022 HNE_0023 HNE_0023 HNE_0024 HNE_0024 HNE_0025 HNE_0025 ubiG ubiG HNE_0883 HNE_0883 HNE_0884 HNE_0884 HNE_1013 HNE_1013 HNE_1015 HNE_1015 HNE_1016 HNE_1016 HNE_1017 HNE_1017 HNE_1018 HNE_1018 HNE_1019 HNE_1019 HNE_1373 HNE_1373 HNE_2468 HNE_2468 HNE_3299 HNE_3299 HNE_3300 HNE_3300 HNE_3301 HNE_3301 HNE_3302 HNE_3302 HNE_3303 HNE_3303 HNE_3304 HNE_3304 HNE_3305 HNE_3305 HNE_3306 HNE_3306 HNE_3307 HNE_3307 xerC xerC HNE_3362 HNE_3362 HNE_3363 HNE_3363 HNE_3364 HNE_3364 ubiF ubiF
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
HNE_0021Identified by match to protein family HMM TIGR02466. (203 aa)
HNE_0022GTP-binding protein. (160 aa)
HNE_0023Hypothetical protein; Identified by Glimmer2; putative. (128 aa)
HNE_0024Conserved hypothetical protein; Identified by similarity to GB:BAC48418.1. (147 aa)
HNE_0025Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. (207 aa)
ubiGUbiquinone biosynthesis O-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family. (258 aa)
HNE_0883Conserved hypothetical protein; Identified by similarity to GB:AAS71142.1. (156 aa)
HNE_0884Transcriptional regulator, ArsR family; Identified by match to protein family HMM PF01022. (111 aa)
HNE_1013Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047. (148 aa)
HNE_1015Conserved hypothetical protein; Identified by similarity to GB:BAD58667.1. (144 aa)
HNE_1016Identified by match to protein family HMM PF06983. (160 aa)
HNE_1017Conserved hypothetical protein; Identified by similarity to PIR:H95898. (69 aa)
HNE_1018Identified by match to protein family HMM PF00903. (164 aa)
HNE_1019Conserved hypothetical protein; Identified by similarity to GB:BAB54219.1. (238 aa)
HNE_1373Riboflavin biosynthesis protein RibD C-terminal domain protein; Identified by match to protein family HMM PF01872. (176 aa)
HNE_2468Putative oxidoreductase; Identified by match to protein family HMM PF01266. (409 aa)
HNE_3299Conserved hypothetical protein; Identified by similarity to GB:CAC47295.1. (95 aa)
HNE_3300Conserved domain protein; Identified by similarity to GB:AAT43525.1. (82 aa)
HNE_3301Conserved domain protein; Identified by similarity to GB:AAM40706.1. (92 aa)
HNE_3302Conserved hypothetical protein; Identified by similarity to SP:Q88E79; match to protein family HMM PF05779; Belongs to the UPF0260 family. (149 aa)
HNE_3303Transcriptional regulator, ArsR family; Identified by match to protein family HMM PF01022. (107 aa)
HNE_3304Putative membrane protein. (72 aa)
HNE_3305Conserved hypothetical protein; Identified by similarity to PIR:C95983. (141 aa)
HNE_3306Conserved hypothetical protein; Identified by similarity to GB:BAC52018.1. (133 aa)
HNE_3307Conserved hypothetical protein; Identified by similarity to GB:BAB49428.1. (132 aa)
xerCPutative tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (299 aa)
HNE_3362Putative membrane protein. (156 aa)
HNE_3363Conserved hypothetical protein; Identified by similarity to GB:CAC45517.1. (127 aa)
HNE_3364Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047. (157 aa)
ubiF2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Identified by similarity to SP:P75728; match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM TIGR01988. (402 aa)
Your Current Organism:
Hyphomonas neptunium
NCBI taxonomy Id: 228405
Other names: H. neptunium ATCC 15444, Hyphomonas neptunium ATCC 15444, Hyphomonas neptunium str. ATCC 15444, Hyphomonas neptunium strain ATCC 15444
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