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rpl37ae rpl37ae rps12 rps12 rpl14 rpl14 rpl11 rpl11 NEQ179 NEQ179 rpl44e rpl44e rps19e rps19e rpl13 rpl13 rpl6 rpl6 rps7 rps7 rps4 rps4 rpl24 rpl24 rps8 rps8 rpl34e rpl34e rpl30 rpl30 rpl15 rpl15 rpl2 rpl2 NEQ364 NEQ364 rps5 rps5 rpl3 rpl3 rps4e rps4e rps19 rps19 rps15 rps15 rpl18e rpl18e rps2 rps2 fusA fusA rpl1 rpl1 rps24e rps24e
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rpl37aeNEQ038; Binds to the 23S rRNA. (86 aa)
rps12NEQ058; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family. (143 aa)
rpl14NEQ092; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (133 aa)
rpl11NEQ101; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family. (160 aa)
NEQ179NEQ179; Ribosomal protein L7Ae/L30E/S12e/Gadd45 family [Methanococcus jannaschii]; COG1911: Ribosomal protein L30E; IPR000955: Ribosomal protein L7AE; IPR000231: Ribosomal protein L30e. (86 aa)
rpl44eNEQ183; Binds to the 23S rRNA. (108 aa)
rps19eNEQ187; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family. (162 aa)
rpl13NEQ207; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (162 aa)
rpl6NEQ241; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (192 aa)
rps7NEQ242; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family. (198 aa)
rps4NEQ247; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (180 aa)
rpl24NEQ257; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. (140 aa)
rps8NEQ274; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (129 aa)
rpl34eNEQ297; LSU ribosomal protein L34E [Methanococcus jannaschii]; COG2174: Ribosomal protein L34E; IPR001284: Ribosomal protein L34e; IPR001472: Bipartite nuclear localization signal; Belongs to the eukaryotic ribosomal protein eL34 family. (83 aa)
rpl30NEQ311; LSU ribosomal protein L30P [Methanococcus jannaschii]; COG1841: Ribosomal protein L30/L7E; IPR000517: Ribosomal protein L30. (155 aa)
rpl15NEQ317; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (138 aa)
rpl2NEQ361; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (238 aa)
NEQ364NEQ364; LSU ribosomal protein L31E [Methanococcus jannaschii]; COG2097: Ribosomal protein L31E; IPR000054: Ribosomal protein L31e. (79 aa)
rps5NEQ388; With S4 and S12 plays an important role in translational accuracy. (231 aa)
rpl3NEQ433; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (321 aa)
rps4eNEQ478; Ribosomal protein S4 [Methanothermobacter thermautotrophicus]; COG1471: Ribosomal protein S4E; IPR000876: Ribosomal protein S4E; IPR002942: S4 domain. (234 aa)
rps19NEQ480; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (140 aa)
rps15NEQ487; Ribosomal protein S15P/S13E [Methanopyrus kandleri]; COG0184: Ribosomal protein S15P/S13E; IPR000589: Ribosomal protein S15. (154 aa)
rpl18eNEQ489; LSU ribosomal protein L18E [Sulfolobus solfataricus]; COG1727: Ribosomal protein L18E; IPR000531: TonB-dependent receptor protein; IPR001196: Ribosomal protein L15; IPR001472: Bipartite nuclear localization signal; Belongs to the eukaryotic ribosomal protein eL18 family. (118 aa)
rps2NEQ508; 30S ribosomal protein S2 [Pyrococcus abyssi]; COG0052: Ribosomal protein S2; IPR001865: Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. (201 aa)
fusANEQ543; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. (743 aa)
rpl1NEQ546; Binds directly to 23S rRNA. Probably involved in E site tRNA release. (213 aa)
rps24eNEQ548; SSU ribosomal protein S24E [Methanococcus jannashii]; COG2004: Ribosomal protein S24E; IPR001976: Ribosomal protein S24e; Belongs to the eukaryotic ribosomal protein eS24 family. (94 aa)
Your Current Organism:
Nanoarchaeum equitans
NCBI taxonomy Id: 228908
Other names: Microarchaeum sp. Kin4-M, N. equitans Kin4-M, Nanoarchaeum equitans Kin4-M, Nanoarchaeum equitans str. Kin4-M
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