(28 nodes) Clathrin binding, and EH domain network (Fusarium graminearum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FG10034.1	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (181 aa)
	A0A098DFW4	Uncharacterized protein. (1054 aa)
	FG05182.1	Uncharacterized protein. (1250 aa)
	FG08982.1	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (448 aa)
	A0A1C3YHW7	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. (987 aa)
	A0A1C3YIN0	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (437 aa)
	A0A1C3YIR6	Zn(2)-C6 fungal-type domain-containing protein. (651 aa)
	A0A1C3YJY1	Clat_adaptor_s domain-containing protein. (262 aa)
	A0A1C3YK51	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1683 aa)
	I1RE15_GIBZE	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family. (239 aa)
	FG01893.1	AP-1 complex subunit gamma. (825 aa)
	FG02127.1	BAR domain-containing protein. (403 aa)
	FG04946.1	MHD domain-containing protein. (883 aa)
	FG05586.1	Protein kinase domain-containing protein. (1017 aa)
	FG05649.1	DUF1681 domain-containing protein. (254 aa)
	FG06945.1	Uncharacterized protein. (1470 aa)
	FG07172.1	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (695 aa)
	FG07432.1	AP-3 complex subunit delta; Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane. (940 aa)
	FG08485.1	ENTH domain-containing protein. (578 aa)
	FG08554.1	CFEM domain-containing protein. (207 aa)
	FG09167.1	ENTH domain-containing protein. (623 aa)
	FG09721.1	Uncharacterized protein. (397 aa)
	FG09734.1	Rad60-SLD_2 domain-containing protein. (260 aa)
	FG09962.1	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (539 aa)
	APS2	AP-2 complex subunit sigma; Component of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration (By similarity). (143 aa)
	FG05286.1	AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. (776 aa)
	FG06317.1	AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. (747 aa)
	FG09735.1	AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. (713 aa)

Your Current Organism:

Fusarium graminearum

NCBI taxonomy Id: 229533
Other names: F. graminearum PH-1, Fusarium graminearum PH-1, Gibberella zeae PH-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A098DFW4	A0A1C3YIR6	A0A098DFW4	A0A1C3YIR6	Uncharacterized protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.594
A0A098DFW4	A0A1C3YK51	A0A098DFW4	A0A1C3YK51	Uncharacterized protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.956
A0A098DFW4	FG01893.1	A0A098DFW4	I1RE20	Uncharacterized protein.	AP-1 complex subunit gamma.	0.730
A0A098DFW4	FG02127.1	A0A098DFW4	I1REN4	Uncharacterized protein.	BAR domain-containing protein.	0.650
A0A098DFW4	FG05182.1	A0A098DFW4	A0A098DYT7	Uncharacterized protein.	Uncharacterized protein.	0.580
A0A098DFW4	FG05286.1	A0A098DFW4	V6R9X9	Uncharacterized protein.	AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.627
A0A098DFW4	FG05586.1	A0A098DFW4	I1RNK3	Uncharacterized protein.	Protein kinase domain-containing protein.	0.729
A0A098DFW4	FG05649.1	A0A098DFW4	I1RNR3	Uncharacterized protein.	DUF1681 domain-containing protein.	0.633
A0A098DFW4	FG06317.1	A0A098DFW4	V6RKE4	Uncharacterized protein.	AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.640
A0A098DFW4	FG06945.1	A0A098DFW4	I1RS38	Uncharacterized protein.	Uncharacterized protein.	0.580
A0A098DFW4	FG07172.1	A0A098DFW4	I1RSP4	Uncharacterized protein.	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.762
A0A098DFW4	FG07432.1	A0A098DFW4	I1RTD0	Uncharacterized protein.	AP-3 complex subunit delta; Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane.	0.682
A0A098DFW4	FG08485.1	A0A098DFW4	I1RW32	Uncharacterized protein.	ENTH domain-containing protein.	0.879
A0A098DFW4	FG08554.1	A0A098DFW4	I1RW93	Uncharacterized protein.	CFEM domain-containing protein.	0.406
A0A098DFW4	FG08982.1	A0A098DFW4	A0A0E0SGM3	Uncharacterized protein.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.662
A0A098DFW4	FG09167.1	A0A098DFW4	I1RXU1	Uncharacterized protein.	ENTH domain-containing protein.	0.876
A0A098DFW4	FG09721.1	A0A098DFW4	I1RZ91	Uncharacterized protein.	Uncharacterized protein.	0.754
A0A098DFW4	FG09734.1	A0A098DFW4	I1RZA4	Uncharacterized protein.	Rad60-SLD_2 domain-containing protein.	0.640
A0A098DFW4	FG09735.1	A0A098DFW4	V6RQ48	Uncharacterized protein.	AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.640
A0A098DFW4	FG10034.1	A0A098DFW4	A0A098D8V4	Uncharacterized protein.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.651