(54 nodes) Cytosolic ribosome network (Penicillium nordicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ACN38_g11428	Uncharacterized protein. (236 aa)
	ACN38_g11259	Ribos_L4_asso_C domain-containing protein. (370 aa)
	ACN38_g9464	Ribosomal_L28e domain-containing protein. (151 aa)
	ACN38_g7767	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (201 aa)
	ACN38_g7601	Ribosomal_L16 domain-containing protein. (221 aa)
	ACN38_g10957	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (96 aa)
	ACN38_g11288	Uncharacterized protein. (169 aa)
	ACN38_g6546	Uncharacterized protein. (116 aa)
	ACN38_g10401	S10_plectin domain-containing protein. (244 aa)
	RPS1	40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family. (256 aa)
	ACN38_g9867	Uncharacterized protein. (227 aa)
	rpl15	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (656 aa)
	ACN38_g6268	Ribosomal_L7Ae domain-containing protein. (265 aa)
	ACN38_g3988	Uncharacterized protein. (197 aa)
	ACN38_g7723	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (135 aa)
	ACN38_g5852	60S ribosomal protein L20; Belongs to the eukaryotic ribosomal protein eL20 family. (148 aa)
	ACN38_g3618	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (279 aa)
	ACN38_g6368	Uncharacterized protein. (124 aa)
	ACN38_g6576	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (140 aa)
	ACN38_g5259	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (250 aa)
	RPS0	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (303 aa)
	ACN38_g6056	Uncharacterized protein. (92 aa)
	ACN38_g5092	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family. (145 aa)
	ACN38_g76	Uncharacterized protein. (124 aa)
	ACN38_g4029	40S ribosomal protein S27. (140 aa)
	ACN38_g155	Uncharacterized protein. (140 aa)
	ACN38_g4056	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (260 aa)
	ACN38_g4005	Uncharacterized protein. (189 aa)
	ACN38_g3174	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (176 aa)
	ACN38_g2158	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (179 aa)
	ACN38_g1951	Uncharacterized protein. (249 aa)
	ACN38_g2277	Uncharacterized protein. (142 aa)
	ACN38_g11002	Uncharacterized protein; Belongs to the universal ribosomal protein uS8 family. (130 aa)
	ACN38_g10981	KOW domain-containing protein. (183 aa)
	ACN38_g10677	Uncharacterized protein. (254 aa)
	ACN38_g9758	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family. (211 aa)
	ACN38_g9368	Ribosomal_L23eN domain-containing protein. (185 aa)
	ACN38_g9142	Uncharacterized protein. (141 aa)
	ACN38_g8341	Uncharacterized protein. (188 aa)
	ACN38_g7273	APH domain-containing protein. (320 aa)
	ACN38_g6702	Ribosomal_L2_C domain-containing protein. (184 aa)
	ACN38_g6483	Ribosomal_L7Ae domain-containing protein. (137 aa)
	ACN38_g6405	Ribosomal_L19e domain-containing protein. (132 aa)
	ACN38_g3650	Ribosomal_L18_c domain-containing protein. (609 aa)
	ACN38_g3422	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family. (196 aa)
	ACN38_g2179	Uncharacterized protein. (254 aa)
	ACN38_g1967	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family. (79 aa)
	ACN38_g403	KOW domain-containing protein. (213 aa)
	ACN38_g11419	Uncharacterized protein. (178 aa)
	rpl3	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (1294 aa)
	ACN38_g6850	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (123 aa)
	ACN38_g2061	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (133 aa)
	ACN38_g1909	Uncharacterized protein. (253 aa)
	ACN38_g1203	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (228 aa)

Your Current Organism:

Penicillium nordicum

NCBI taxonomy Id: 229535
Other names: P. nordicum

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACN38_g10401	ACN38_g10677	A0A0M8P0I7	A0A0M9WBH7	S10_plectin domain-containing protein.	Uncharacterized protein.	0.998
ACN38_g10401	ACN38_g10957	A0A0M8P0I7	A0A0M8NZK0	S10_plectin domain-containing protein.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.999
ACN38_g10401	ACN38_g10981	A0A0M8P0I7	A0A0M9WBC4	S10_plectin domain-containing protein.	KOW domain-containing protein.	0.998
ACN38_g10401	ACN38_g11002	A0A0M8P0I7	A0A0M9WB54	S10_plectin domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS8 family.	0.999
ACN38_g10401	ACN38_g11259	A0A0M8P0I7	A0A0M8NRI1	S10_plectin domain-containing protein.	Ribos_L4_asso_C domain-containing protein.	0.999
ACN38_g10401	ACN38_g11288	A0A0M8P0I7	A0A0M8P058	S10_plectin domain-containing protein.	Uncharacterized protein.	0.998
ACN38_g10401	ACN38_g11419	A0A0M8P0I7	A0A0N0RXL5	S10_plectin domain-containing protein.	Uncharacterized protein.	0.998
ACN38_g10401	ACN38_g11428	A0A0M8P0I7	A0A0M8NR77	S10_plectin domain-containing protein.	Uncharacterized protein.	0.999
ACN38_g10401	ACN38_g1203	A0A0M8P0I7	A0A0N0RZY1	S10_plectin domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.997
ACN38_g10401	ACN38_g155	A0A0M8P0I7	A0A0M8PBC3	S10_plectin domain-containing protein.	Uncharacterized protein.	0.999
ACN38_g10401	ACN38_g1909	A0A0M8P0I7	A0A0N0RZR7	S10_plectin domain-containing protein.	Uncharacterized protein.	0.998
ACN38_g10401	ACN38_g1951	A0A0M8P0I7	A0A0M8PEQ9	S10_plectin domain-containing protein.	Uncharacterized protein.	0.998
ACN38_g10401	ACN38_g1967	A0A0M8P0I7	A0A0M9WJD3	S10_plectin domain-containing protein.	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.	0.998
ACN38_g10401	ACN38_g2061	A0A0M8P0I7	A0A0N0RZQ7	S10_plectin domain-containing protein.	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	0.999
ACN38_g10401	ACN38_g2158	A0A0M8P0I7	A0A0M8PEA5	S10_plectin domain-containing protein.	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.999
ACN38_g10401	ACN38_g2179	A0A0M8P0I7	A0A0M9WJ79	S10_plectin domain-containing protein.	Uncharacterized protein.	0.998
ACN38_g10401	ACN38_g2277	A0A0M8P0I7	A0A0M8PFT9	S10_plectin domain-containing protein.	Uncharacterized protein.	0.999
ACN38_g10401	ACN38_g3174	A0A0M8P0I7	A0A0M8PDC9	S10_plectin domain-containing protein.	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	0.998
ACN38_g10401	ACN38_g3422	A0A0M8P0I7	A0A0M9WI16	S10_plectin domain-containing protein.	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	0.999
ACN38_g10401	ACN38_g3618	A0A0M8P0I7	A0A0M8P828	S10_plectin domain-containing protein.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.999