(14 nodes) Deoxyribonucleotide biosynthetic process, and CTP metabolic process network (Coprinopsis marcescibilis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A5C3KBQ4	Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. (871 aa)
	A0A5C3KE53	Guanylate kinase. (204 aa)
	A0A5C3KF35	Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. (733 aa)
	A0A5C3KNX8	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. (612 aa)
	A0A5C3KWN4	Flavo protein. (258 aa)
	A0A5C3KZ83	Thymidylate_kin domain-containing protein. (256 aa)
	A0A5C3L2M5	Nucleoside diphosphate kinase. (151 aa)
	A0A5C3L2Q0	dUTP pyrophosphatase. (178 aa)
	A0A5C3L4Q0	Thymidylate synthase. (311 aa)
	A0A5C3L4Y3	Ribonucleotide reductase. (341 aa)
	A0A5C3L763	Ribonucleotide reductase small subunit. (361 aa)
	A0A5C3LBM8	Uncharacterized protein; Belongs to the GDA1/CD39 NTPase family. (748 aa)
	A0A5C3LCZ0	CMP/dCMP-type deaminase domain-containing protein. (310 aa)
	FA15DRAFT_6599	Dihydrofolate reductase; Belongs to the dihydrofolate reductase family. (209 aa)

Your Current Organism:

Coprinopsis marcescibilis

NCBI taxonomy Id: 230819
Other names: C. marcescibilis, Coprinopsis marcescibilis (Britzelm.) Oerstadius & E. Larss. 2008, Psathyrella marcescibilis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A5C3KBQ4	A0A5C3KE53	A0A5C3KBQ4	A0A5C3KE53	Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.	Guanylate kinase.	0.828
A0A5C3KBQ4	A0A5C3KNX8	A0A5C3KBQ4	A0A5C3KNX8	Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	0.759
A0A5C3KBQ4	A0A5C3KWN4	A0A5C3KBQ4	A0A5C3KWN4	Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.	Flavo protein.	0.804
A0A5C3KBQ4	A0A5C3KZ83	A0A5C3KBQ4	A0A5C3KZ83	Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.	Thymidylate_kin domain-containing protein.	0.890
A0A5C3KBQ4	A0A5C3L2M5	A0A5C3KBQ4	A0A5C3L2M5	Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.	Nucleoside diphosphate kinase.	0.828
A0A5C3KBQ4	A0A5C3L2Q0	A0A5C3KBQ4	A0A5C3L2Q0	Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.	dUTP pyrophosphatase.	0.919
A0A5C3KBQ4	A0A5C3L4Q0	A0A5C3KBQ4	A0A5C3L4Q0	Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.	Thymidylate synthase.	0.804
A0A5C3KBQ4	A0A5C3L4Y3	A0A5C3KBQ4	A0A5C3L4Y3	Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.	Ribonucleotide reductase.	0.977
A0A5C3KBQ4	A0A5C3L763	A0A5C3KBQ4	A0A5C3L763	Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.	Ribonucleotide reductase small subunit.	0.976
A0A5C3KBQ4	A0A5C3LBM8	A0A5C3KBQ4	A0A5C3LBM8	Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.	Uncharacterized protein; Belongs to the GDA1/CD39 NTPase family.	0.790
A0A5C3KBQ4	FA15DRAFT_6599	A0A5C3KBQ4	A0A5C3LNX2	Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.	Dihydrofolate reductase; Belongs to the dihydrofolate reductase family.	0.518
A0A5C3KE53	A0A5C3KBQ4	A0A5C3KE53	A0A5C3KBQ4	Guanylate kinase.	Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.	0.828
A0A5C3KE53	A0A5C3KF35	A0A5C3KE53	A0A5C3KF35	Guanylate kinase.	Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.	0.828
A0A5C3KE53	A0A5C3KNX8	A0A5C3KE53	A0A5C3KNX8	Guanylate kinase.	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	0.542
A0A5C3KE53	A0A5C3KWN4	A0A5C3KE53	A0A5C3KWN4	Guanylate kinase.	Flavo protein.	0.792
A0A5C3KE53	A0A5C3KZ83	A0A5C3KE53	A0A5C3KZ83	Guanylate kinase.	Thymidylate_kin domain-containing protein.	0.602
A0A5C3KE53	A0A5C3L2M5	A0A5C3KE53	A0A5C3L2M5	Guanylate kinase.	Nucleoside diphosphate kinase.	0.875
A0A5C3KE53	A0A5C3L2Q0	A0A5C3KE53	A0A5C3L2Q0	Guanylate kinase.	dUTP pyrophosphatase.	0.624
A0A5C3KE53	A0A5C3L4Q0	A0A5C3KE53	A0A5C3L4Q0	Guanylate kinase.	Thymidylate synthase.	0.792
A0A5C3KE53	A0A5C3L4Y3	A0A5C3KE53	A0A5C3L4Y3	Guanylate kinase.	Ribonucleotide reductase.	0.761