(12 nodes) U2 snRNP network (Coprinopsis marcescibilis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A5C3KGD6	DUF382-domain-containing protein. (595 aa)
	A0A5C3KPW8	Pre-mRNA-splicing factor RSE1. (1213 aa)
	A0A5C3KYZ5	Uncharacterized protein. (311 aa)
	A0A5C3L0J3	PHF5-like protein. (110 aa)
	A0A5C3L151	Uncharacterized protein. (775 aa)
	A0A5C3L1G7	Splicing factor subunit; Belongs to the SF3B5 family. (87 aa)
	A0A5C3L793	Pre-mRNA branch site protein p14. (122 aa)
	A0A5C3L9C4	P-loop containing nucleoside triphosphate hydrolase protein. (1068 aa)
	A0A5C3LA43	RNA splicing factor PRP9. (509 aa)
	A0A5C3LAN0	Small nuclear ribonucleo protein. (1153 aa)
	A0A5C3LCB7	Small nuclear ribonucleo protein polypeptide A. (247 aa)
	A0A5C3LDG7	Matrin-type domain-containing protein. (220 aa)

Your Current Organism:

Coprinopsis marcescibilis

NCBI taxonomy Id: 230819
Other names: C. marcescibilis, Coprinopsis marcescibilis (Britzelm.) Oerstadius & E. Larss. 2008, Psathyrella marcescibilis

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A5C3KGD6	A0A5C3KPW8	DUF382-domain-containing protein.	Pre-mRNA-splicing factor RSE1.	0.999
A0A5C3KGD6	A0A5C3KYZ5	DUF382-domain-containing protein.	Uncharacterized protein.	0.999
A0A5C3KGD6	A0A5C3L0J3	DUF382-domain-containing protein.	PHF5-like protein.	0.999
A0A5C3KGD6	A0A5C3L151	DUF382-domain-containing protein.	Uncharacterized protein.	0.995
A0A5C3KGD6	A0A5C3L1G7	DUF382-domain-containing protein.	Splicing factor subunit; Belongs to the SF3B5 family.	0.998
A0A5C3KGD6	A0A5C3L793	DUF382-domain-containing protein.	Pre-mRNA branch site protein p14.	0.993
A0A5C3KGD6	A0A5C3L9C4	DUF382-domain-containing protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.989
A0A5C3KGD6	A0A5C3LA43	DUF382-domain-containing protein.	RNA splicing factor PRP9.	0.996
A0A5C3KGD6	A0A5C3LAN0	DUF382-domain-containing protein.	Small nuclear ribonucleo protein.	0.999
A0A5C3KGD6	A0A5C3LCB7	DUF382-domain-containing protein.	Small nuclear ribonucleo protein polypeptide A.	0.995
A0A5C3KGD6	A0A5C3LDG7	DUF382-domain-containing protein.	Matrin-type domain-containing protein.	0.995
A0A5C3KPW8	A0A5C3KGD6	Pre-mRNA-splicing factor RSE1.	DUF382-domain-containing protein.	0.999
A0A5C3KPW8	A0A5C3KYZ5	Pre-mRNA-splicing factor RSE1.	Uncharacterized protein.	0.999
A0A5C3KPW8	A0A5C3L0J3	Pre-mRNA-splicing factor RSE1.	PHF5-like protein.	0.999
A0A5C3KPW8	A0A5C3L151	Pre-mRNA-splicing factor RSE1.	Uncharacterized protein.	0.995
A0A5C3KPW8	A0A5C3L1G7	Pre-mRNA-splicing factor RSE1.	Splicing factor subunit; Belongs to the SF3B5 family.	0.998
A0A5C3KPW8	A0A5C3L793	Pre-mRNA-splicing factor RSE1.	Pre-mRNA branch site protein p14.	0.998
A0A5C3KPW8	A0A5C3L9C4	Pre-mRNA-splicing factor RSE1.	P-loop containing nucleoside triphosphate hydrolase protein.	0.993
A0A5C3KPW8	A0A5C3LA43	Pre-mRNA-splicing factor RSE1.	RNA splicing factor PRP9.	0.995
A0A5C3KPW8	A0A5C3LAN0	Pre-mRNA-splicing factor RSE1.	Small nuclear ribonucleo protein.	0.999