(7 nodes) U2 snRNP network (Coprinopsis marcescibilis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A5C3KGD6	DUF382-domain-containing protein. (595 aa)
	A0A5C3KPW8	Pre-mRNA-splicing factor RSE1. (1213 aa)
	A0A5C3KYZ5	Uncharacterized protein. (311 aa)
	A0A5C3L0J3	PHF5-like protein. (110 aa)
	A0A5C3L1G7	Splicing factor subunit; Belongs to the SF3B5 family. (87 aa)
	A0A5C3L793	Pre-mRNA branch site protein p14. (122 aa)
	A0A5C3LAN0	Small nuclear ribonucleo protein. (1153 aa)

Your Current Organism:

Coprinopsis marcescibilis

NCBI taxonomy Id: 230819
Other names: C. marcescibilis, Coprinopsis marcescibilis (Britzelm.) Oerstadius & E. Larss. 2008, Psathyrella marcescibilis

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A5C3KGD6	A0A5C3KPW8	DUF382-domain-containing protein.	Pre-mRNA-splicing factor RSE1.	0.999
A0A5C3KGD6	A0A5C3KYZ5	DUF382-domain-containing protein.	Uncharacterized protein.	0.999
A0A5C3KGD6	A0A5C3L0J3	DUF382-domain-containing protein.	PHF5-like protein.	0.999
A0A5C3KGD6	A0A5C3L1G7	DUF382-domain-containing protein.	Splicing factor subunit; Belongs to the SF3B5 family.	0.998
A0A5C3KGD6	A0A5C3L793	DUF382-domain-containing protein.	Pre-mRNA branch site protein p14.	0.993
A0A5C3KGD6	A0A5C3LAN0	DUF382-domain-containing protein.	Small nuclear ribonucleo protein.	0.999
A0A5C3KPW8	A0A5C3KGD6	Pre-mRNA-splicing factor RSE1.	DUF382-domain-containing protein.	0.999
A0A5C3KPW8	A0A5C3KYZ5	Pre-mRNA-splicing factor RSE1.	Uncharacterized protein.	0.999
A0A5C3KPW8	A0A5C3L0J3	Pre-mRNA-splicing factor RSE1.	PHF5-like protein.	0.999
A0A5C3KPW8	A0A5C3L1G7	Pre-mRNA-splicing factor RSE1.	Splicing factor subunit; Belongs to the SF3B5 family.	0.998
A0A5C3KPW8	A0A5C3L793	Pre-mRNA-splicing factor RSE1.	Pre-mRNA branch site protein p14.	0.998
A0A5C3KPW8	A0A5C3LAN0	Pre-mRNA-splicing factor RSE1.	Small nuclear ribonucleo protein.	0.999
A0A5C3KYZ5	A0A5C3KGD6	Uncharacterized protein.	DUF382-domain-containing protein.	0.999
A0A5C3KYZ5	A0A5C3KPW8	Uncharacterized protein.	Pre-mRNA-splicing factor RSE1.	0.999
A0A5C3KYZ5	A0A5C3L0J3	Uncharacterized protein.	PHF5-like protein.	0.999
A0A5C3KYZ5	A0A5C3L1G7	Uncharacterized protein.	Splicing factor subunit; Belongs to the SF3B5 family.	0.998
A0A5C3KYZ5	A0A5C3L793	Uncharacterized protein.	Pre-mRNA branch site protein p14.	0.993
A0A5C3KYZ5	A0A5C3LAN0	Uncharacterized protein.	Small nuclear ribonucleo protein.	0.999
A0A5C3L0J3	A0A5C3KGD6	PHF5-like protein.	DUF382-domain-containing protein.	0.999
A0A5C3L0J3	A0A5C3KPW8	PHF5-like protein.	Pre-mRNA-splicing factor RSE1.	0.999