STRINGSTRING
RFC52 RFC52 ORC1 ORC1 CaO19.3019 CaO19.3019 POL32 POL32 CaO19.6247 CaO19.6247 CaO19.2796 CaO19.2796 CaO19.667 CaO19.667 GIN1 GIN1 CAS1 CAS1 CDC6 CDC6 DLH1 DLH1 CDC54 CDC54 MSH6 MSH6 MLH3 MLH3 DPB4 DPB4 RFC5 RFC5 RAD7 RAD7 CDC7 CDC7 RFC1 RFC1 MCM3 MCM3 CaO19.1434 CaO19.1434 RAD57 RAD57 CDC47 CDC47 PMS1 PMS1 RAD1 RAD1 CaO19.6155 CaO19.6155 RAD50 RAD50 DDC1 DDC1 RAD53 RAD53 POL1 POL1 REV3 REV3 CaO19.366 CaO19.366 CaO19.5675 CaO19.5675 CaO19.4163 CaO19.4163 CaO19.2713 CaO19.2713 RAD2 RAD2 RAD59 RAD59 PRI2 PRI2 EXO1 EXO1 ORC4 ORC4 RAD9 RAD9 RFC3 RFC3 DUN1 DUN1 CaO19.4030 CaO19.4030 DNA2 DNA2 DCC1 DCC1 RFC2 RFC2 MRE11 MRE11 POL3 POL3 RRM3 RRM3 CaO19.2579 CaO19.2579 MCM6 MCM6 YKU80 YKU80 CaO19.496 CaO19.496 POL2 POL2 CaO19.6286 CaO19.6286 CDC45 CDC45 CaO19.607 CaO19.607 DPB2 DPB2 CaO19.7621 CaO19.7621 RFC4 RFC4 SLD5 SLD5 UBC2 UBC2 LIG4 LIG4 RAD14 RAD14 MEC1 MEC1 PSF2 PSF2 RAD52 RAD52 MUS81 MUS81 YBL053 YBL053 CDC46 CDC46 MEC3 MEC3 CaO19.29 CaO19.29 CaO19.4412 CaO19.4412 DED81 DED81 PSF1 PSF1 MLH1 MLH1 CaO19.2369 CaO19.2369 ORC3 ORC3 IME2 IME2 RAD51 RAD51 RFX1 RFX1 CaO19.4441 CaO19.4441 CSM3 CSM3 CTF8 CTF8 MSH3 MSH3 CaO19.1406 CaO19.1406 RFA2 RFA2 MCM2 MCM2 MSH2 MSH2 RAD18 RAD18 SLX1 SLX1 DBF4 DBF4 RDH54 RDH54 PSO2 PSO2 CaO19.5358 CaO19.5358 SGS1 SGS1 NCE4 NCE4 RAD27 RAD27 CaO19.5429 CaO19.5429 CTF18 CTF18 CaO19.3289 CaO19.3289 RAD10 RAD10 TEL1 TEL1 RAD5 RAD5 RFA1 RFA1 CaO19.2728 CaO19.2728 PSF3 PSF3 RAD16 RAD16 CaO19.1667 CaO19.1667 HYS2 HYS2 RAD54 RAD54 ESC4 ESC4 POL30 POL30 CaO19.5970 CaO19.5970 CaO19.5934 CaO19.5934 CaO19.4830 CaO19.4830
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RFC52Rfc52p. (43 aa)
ORC1Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. (805 aa)
CaO19.3019SsDNA-dependent ATPase. (678 aa)
POL32DNA polymerase delta subunit. (403 aa)
CaO19.6247Chromatin-binding protein. (871 aa)
CaO19.2796DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (664 aa)
CaO19.667Uncharacterized protein. (726 aa)
GIN1Chromatin-modulating protein. (1234 aa)
CAS1ATP-dependent DNA helicase. (811 aa)
CDC6Cell division control protein; Belongs to the CDC6/cdc18 family. (481 aa)
DLH1Recombinase; Belongs to the RecA family. (324 aa)
CDC54DNA helicase; Belongs to the MCM family. (912 aa)
MSH6DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1214 aa)
MLH3Mismatch repair protein. (636 aa)
DPB4DNA polymerase epsilon noncatalytic subunit. (261 aa)
RFC5Replication factor C subunit 5. (362 aa)
RAD7UV-damaged DNA-binding protein. (652 aa)
CDC7Serine/threonine protein kinase. (656 aa)
RFC1Replication factor C subunit 1. (888 aa)
MCM3DNA helicase; Belongs to the MCM family. (878 aa)
CaO19.1434Protein kinase activating protein. (716 aa)
RAD57Putative DNA-dependent ATPase. (511 aa)
CDC47DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] (781 aa)
PMS1ATP-binding mismatch repair protein. (910 aa)
RAD1SsDNA endodeoxyribonuclease. (970 aa)
CaO19.6155DNA ligase. (770 aa)
RAD50MRX complex DNA-binding subunit. (1332 aa)
DDC1DNA repair protein rad9; Acts in DNA repair and mutagenesis. Involved in promoting resistance to ionizing radiation and UV light, as well as regulating cell cycle progression after irradiation. (488 aa)
RAD53Serine/threonine-protein kinase RAD53; Controls S-phase checkpoint as well as G1 and G2 DNA damage checkpoints. Phosphorylates proteins on serine, threonine, and tyrosine. Prevents entry into anaphase and mitotic exit after DNA damage via regulation of the Polo kinase CDC5. (699 aa)
POL1DNA polymerase. (1470 aa)
REV3DNA polymerase. (1630 aa)
CaO19.366DNA damage checkpoint control protein RAD17; Component of the checkpoint clamp complex involved in the surveillance mechanism that allows the DNA repair pathways to act to restore the integrity of the DNA prior to DNA synthesis or separation of the replicated chromosomes; Belongs to the rad1 family. (336 aa)
CaO19.5675Translocase. (1102 aa)
CaO19.4163Uncharacterized protein. (1072 aa)
CaO19.2713MutS family protein. (802 aa)
RAD2SsDNA endodeoxyribonuclease. (990 aa)
RAD59DNA repair protein RAD59; Involved in the repair of double-strand breaks in DNA during vegetative growth via recombination and single-strand annealing. Anneals complementary single-stranded DNA. (215 aa)
PRI2DNA primase large subunit; DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication; Belongs to the eukaryotic-type primase large subunit family. (543 aa)
EXO1Rad2 family nuclease. (699 aa)
ORC4Origin recognition complex subunit 4; Component of the origin recognition complex (ORC) that binds origins of replication; Belongs to the ORC4 family. (564 aa)
RAD9Chromatin-binding protein. (1174 aa)
RFC3Replication factor C subunit 3. (347 aa)
DUN1Serine/threonine protein kinase. (530 aa)
CaO19.4030DNA primase; Belongs to the eukaryotic-type primase small subunit family. (424 aa)
DNA2Bifunctional ATP-dependent DNA helicase/ssDNA endodeoxyribonuclease. (1426 aa)
DCC1Dcc1p. (339 aa)
RFC2Replication factor C subunit 2. (363 aa)
MRE11Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (682 aa)
POL3DNA polymerase. (1038 aa)
RRM3ATP-dependent DNA helicase RRM3; 5' to 3' DNA replicative helicase recruited to paused replisomes to promote fork progression throughout nonhistone protein- DNA complexes, naturally occurring impediments that are encountered in each S phase where replication forks pauses. Required for timely replication of the telomere and subtelomeric DNA and for wild-type levels of telomeric silencing. Involved in DNA repair during stalled replication fork, regulation of fragile sites expression and essential for genome stability. Plays also a role in mtDNA replication. Has G- quadruplex (G4) unwindi [...] (618 aa)
CaO19.2579MutS family protein. (803 aa)
MCM6DNA helicase; Belongs to the MCM family. (880 aa)
YKU80ATP-dependent DNA helicase. (609 aa)
CaO19.496Mismatch repair ATPase. (923 aa)
POL2DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2211 aa)
CaO19.6286Uncharacterized protein. (198 aa)
CDC45DNA replication initiation factor. (579 aa)
CaO19.607DNA-dependent ATPase. (1055 aa)
DPB2DNA polymerase epsilon noncatalytic subunit. (708 aa)
CaO19.7621Uncharacterized protein. (897 aa)
RFC4Replication factor C subunit 4. (323 aa)
SLD5DNA replication complex GINS protein SLD5; The GINS complex plays an essential role in the initiation of DNA replication; Belongs to the GINS4/SLD5 family. (236 aa)
UBC2Ubiquitin-conjugating enzyme E2 2; Catalyzes the covalent attachment of ubiquitin to other proteins. Plays a role in transcription regulation by catalyzing the monoubiquitination of histone H2B to form H2BK123ub1. H2BK123ub1 gives a specific tag for epigenetic transcriptional activation and is also a prerequisite for H3K4me and H3K79me formation. Also involved in postreplication repair of UV-damaged DNA, in N-end rule-dependent protein degradation and in sporulation. (179 aa)
LIG4DNA ligase 4; Involved in ds DNA break (DSB) repair. Has a role in non- homologous integration (NHI) pathways where it is required in the final step of non-homologous end-joining (NHEJ). Not required for the repair of DSBs induced by ionizing radiation or UV light. Has an important role in morphogenesis, positively affecting the capacity to form hyphae. (928 aa)
RAD14DNA repair protein RAD14; Involved in DNA excision repair; Belongs to the XPA family. (396 aa)
MEC1Serine/threonine-protein kinase MEC1; Serine/threonine protein kinase which activates checkpoint signaling upon genotoxic stresses such as ionizing radiation (IR), ultraviolet light (UV), or DNA replication stalling, thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]- Q. Recruited to DNA lesions in order to initiate the DNA repair by homologous recombination. Phosphorylates histone H2A to form H2AS128ph (gamma-H2A) at sites of DNA damage, also involved in the regulation of DNA damage response mechanism. Required for cell growth and meiotic recombina [...] (2325 aa)
PSF2DNA replication complex GINS protein PSF2; The GINS complex plays an essential role in the initiation of DNA replication. Has a role in chromosome segregation (By similarity). (203 aa)
RAD52Recombinase. (564 aa)
MUS81Crossover junction endonuclease MUS81; Interacts with EME1 to form a DNA structure-specific endonuclease with substrate preference for branched DNA structures with a 5'-end at the branch nick. Typical substrates include 3'-flap structures, D-loops, replication forks and nicked Holliday junctions. May be required in mitosis for the processing of stalled or collapsed replication fork intermediates. May be required in meiosis for the repair of meiosis-specific double strand breaks subsequent to single- end invasion (SEI) (By similarity); Belongs to the XPF family. (614 aa)
YBL053Topoisomerase 1-associated factor 1; Forms a fork protection complex (FPC) with CSM3 and which is required for chromosome segregation during meiosis and DNA damage repair. FPC coordinates leading and lagging strand synthesis and moves with the replication fork. FPC stabilizes replication forks in a configuration that is recognized by replication checkpoint sensors (By similarity). (1263 aa)
CDC46DNA helicase; Belongs to the MCM family. (728 aa)
MEC3Checkpoint protein; Belongs to the HUS1 family. (319 aa)
CaO19.29CDT1_C domain-containing protein. (323 aa)
CaO19.4412DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family. (1113 aa)
DED81Asparagine--tRNA ligase. (552 aa)
PSF1DNA replication complex GINS protein PSF1; The GINS complex plays an essential role in the initiation of DNA replication. (236 aa)
MLH1Mismatch repair ATPase. (717 aa)
CaO19.2369Origin recognition complex subunit 5. (496 aa)
ORC3Origin recognition complex subunit 3. (682 aa)
IME2Protein kinase. (520 aa)
RAD51DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily. (361 aa)
RFX1Transcriptional regulator RFX1; Transcription factor involved in DNA damage responses, morphogenesis, and virulence. (851 aa)
CaO19.4441Zf-primase domain-containing protein. (598 aa)
CSM3Chromosome segregation in meiosis protein 3; Forms a fork protection complex (FPC) with TOF1 and which is required for chromosome segregation during meiosis and DNA damage repair. FPC coordinates leading and lagging strand synthesis and moves with the replication fork. FPC stabilizes replication forks in a configuration that is recognized by replication checkpoint sensors (By similarity). (316 aa)
CTF8Ctf8p. (162 aa)
MSH3DNA mismatch repair protein MSH3; Component of the post-replicative DNA mismatch repair system (MMR). Heterodimerizes with MSH2 to form MutS beta, which binds to DNA mismatches thereby initiating DNA repair. MSH3 provides substrate- binding and substrate specificity to the complex. When bound, the MutS beta heterodimer bends the DNA helix and shields approximately 20 base pairs. Acts mainly to repair insertion-deletion loops (IDLs) from 2 to 13 nucleotides in size, but can also repair base-base and single insertion-deletion mismatches that occur during replication. After mismatch bindi [...] (1037 aa)
CaO19.1406Uncharacterized protein. (256 aa)
RFA2Rfa2p. (272 aa)
MCM2DNA helicase; Belongs to the MCM family. (903 aa)
MSH2Mismatch repair ATPase; Component of the post-replicative DNA mismatch repair system (MMR). (873 aa)
RAD18Postreplication repair E3 ubiquitin-protein ligase RAD18; E3 RING-finger protein, member of the UBC2/RAD6 epistasis group. Associates to the E2 ubiquitin conjugating enzyme UBC2/RAD6 to form the UBC2-RAD18 ubiquitin ligase complex involved in postreplicative repair (PRR) of damaged DNA. (378 aa)
SLX1Structure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA. (286 aa)
DBF4Protein serine/threonine kinase activating protein. (506 aa)
RDH54DNA-dependent ATPase. (796 aa)
PSO2Pso2p. (537 aa)
CaO19.5358Origin recognition complex subunit 2. (688 aa)
SGS1ATP-dependent DNA helicase. (1189 aa)
NCE4Nce4p. (168 aa)
RAD27Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (372 aa)
CaO19.5429DNA-binding SCF ubiquitin ligase subunit. (675 aa)
CTF18Ctf18p. (853 aa)
CaO19.3289Origin recognition complex subunit 6. (363 aa)
RAD10Rad10p. (338 aa)
TEL1Serine/threonine-protein kinase TEL1; Serine/threonine protein kinase which activates checkpoint signaling upon genotoxic stresses such as ionizing radiation (IR), ultraviolet light (UV), or DNA replication stalling, thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]- Q. Phosphorylates histone H2A to form H2AS128ph (gamma-H2A) at sites of DNA damage, involved in the regulation of DNA damage response mechanism. Required for the control of telomere length and genome stability (By similarity). (2873 aa)
RAD5DNA repair protein RAD5; Probable helicase, member of the UBC2/RAD6 epistasis group. Functions with DNA repair protein RAD18 in error-free postreplication DNA repair. Involved in the maintenance of wild-type rates of instability of simple repetitive sequences such as poly(GT) repeats. Seems to be involved in maintaining a balance which acts in favor of error-prone non-homologous joining during DNA double-strand breaks repairs (By similarity). (1084 aa)
RFA1Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (624 aa)
CaO19.2728Uncharacterized protein. (589 aa)
PSF3DNA replication complex GINS protein PSF3; The GINS complex plays an essential role in the initiation of DNA replication. (177 aa)
RAD16DNA repair protein. (852 aa)
CaO19.1667Uncharacterized protein. (1250 aa)
HYS2DNA-directed DNA polymerase delta subunit. (474 aa)
RAD54DNA-dependent ATPase. (848 aa)
ESC4Esc4p. (903 aa)
POL30Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (259 aa)
CaO19.5970DNA helicase. (862 aa)
CaO19.5934DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (629 aa)
CaO19.4830Uncharacterized protein. (110 aa)
Your Current Organism:
Candida albicans
NCBI taxonomy Id: 237561
Other names: C. albicans SC5314, Candida albicans SC5314
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