16 items (Candida albicans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FGR16	U4/U6-U5 snRNP complex subunit. (233 aa)
	SNU13	13 kDa ribonucleoprotein-associated protein; Common component of the spliceosome and rRNA processing machinery. In association with the spliceosomal U4/U6.U5 tri-snRNP particle, required for splicing of pre-mRNA. In association with box C/D snoRNPs, required for processing of pre-ribosomal RNA (rRNA) and site-specific 2'-O-methylation of substrate RNAs. Essential for the accumulation and stability of U4 snRNA, U6 snRNA, and box C/D snoRNAs (By similarity). (126 aa)
	CaO19.7673	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (116 aa)
	SMD3	Small nuclear ribonucleoprotein Sm D3. (106 aa)
	CaO19.1045	U2 snRNP complex subunit. (353 aa)
	A0A1D8PF89	Uncharacterized protein. (73 aa)
	A0A1D8PH20	Small nuclear ribonucleoprotein G. (74 aa)
	SMD2	Small nuclear ribonucleoprotein Sm D2. (112 aa)
	CaO19.82	U4/U6-U5 snRNP complex subunit. (569 aa)
	CaO19.6989	RRM domain-containing protein. (107 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (146 aa)
	A0A1D8PPC8	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (86 aa)
	SNP3	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	SMX4	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	CaO19.7581	U2 snRNP complex subunit. (471 aa)
	CaO19.2230	U2 snRNP complex subunit. (119 aa)

Your Current Organism:

Candida albicans

NCBI taxonomy Id: 237561
Other names: C. albicans SC5314, Candida albicans SC5314

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1D8PF89	A0A1D8PH20	A0A1D8PF89	A0A1D8PH20	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.568
A0A1D8PF89	A0A1D8PPC8	A0A1D8PF89	A0A1D8PPC8	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.540
A0A1D8PF89	CaO19.1045	A0A1D8PF89	Q59VP9	Uncharacterized protein.	U2 snRNP complex subunit.	0.558
A0A1D8PF89	CaO19.2230	A0A1D8PF89	Q59Z68	Uncharacterized protein.	U2 snRNP complex subunit.	0.902
A0A1D8PF89	CaO19.6989	A0A1D8PF89	A0A1D8PKA1	Uncharacterized protein.	RRM domain-containing protein.	0.900
A0A1D8PF89	CaO19.7581	A0A1D8PF89	A0A1D8PU52	Uncharacterized protein.	U2 snRNP complex subunit.	0.901
A0A1D8PF89	CaO19.7673	A0A1D8PF89	A0A1D8PUC1	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.540
A0A1D8PF89	SMD2	A0A1D8PF89	A0A1D8PHP3	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D2.	0.542
A0A1D8PF89	SMD3	A0A1D8PF89	Q59NQ6	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D3.	0.543
A0A1D8PH20	A0A1D8PF89	A0A1D8PH20	A0A1D8PF89	Small nuclear ribonucleoprotein G.	Uncharacterized protein.	0.568
A0A1D8PH20	A0A1D8PPC8	A0A1D8PH20	A0A1D8PPC8	Small nuclear ribonucleoprotein G.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
A0A1D8PH20	CaO19.1045	A0A1D8PH20	Q59VP9	Small nuclear ribonucleoprotein G.	U2 snRNP complex subunit.	0.921
A0A1D8PH20	CaO19.2230	A0A1D8PH20	Q59Z68	Small nuclear ribonucleoprotein G.	U2 snRNP complex subunit.	0.997
A0A1D8PH20	CaO19.6989	A0A1D8PH20	A0A1D8PKA1	Small nuclear ribonucleoprotein G.	RRM domain-containing protein.	0.980
A0A1D8PH20	CaO19.7581	A0A1D8PH20	A0A1D8PU52	Small nuclear ribonucleoprotein G.	U2 snRNP complex subunit.	0.993
A0A1D8PH20	CaO19.7673	A0A1D8PH20	A0A1D8PUC1	Small nuclear ribonucleoprotein G.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.999
A0A1D8PH20	CaO19.82	A0A1D8PH20	A0A1D8PHQ5	Small nuclear ribonucleoprotein G.	U4/U6-U5 snRNP complex subunit.	0.986
A0A1D8PH20	FGR16	A0A1D8PH20	Q59WJ8	Small nuclear ribonucleoprotein G.	U4/U6-U5 snRNP complex subunit.	0.570
A0A1D8PH20	LSM8	A0A1D8PH20	A0A1D8PNJ9	Small nuclear ribonucleoprotein G.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.989
A0A1D8PH20	SMD2	A0A1D8PH20	A0A1D8PHP3	Small nuclear ribonucleoprotein G.	Small nuclear ribonucleoprotein Sm D2.	0.999