STRINGSTRING
BUD31 BUD31 CaO19.6356 CaO19.6356 CaO19.7256 CaO19.7256 CaO19.7265 CaO19.7265 CaO19.7266 CaO19.7266 CaO19.2112 CaO19.2112 CaO19.1548 CaO19.1548 A0A1D8PH20 A0A1D8PH20 SMD2 SMD2 CaO19.82 CaO19.82 CaO19.2261 CaO19.2261 CaO19.6989 CaO19.6989 CaO19.7375 CaO19.7375 CaO19.3098 CaO19.3098 LSM8 LSM8 CaO19.4326 CaO19.4326 A0A1D8PNP9 A0A1D8PNP9 A0A1D8PPC8 A0A1D8PPC8 CaO19.5767 CaO19.5767 LSM4 LSM4 LSM6 LSM6 CaO19.7460 CaO19.7460 SNP3 SNP3 CaO19.2368 CaO19.2368 SMX4 SMX4 CaO19.2621 CaO19.2621 CaO19.7343 CaO19.7343 CaO19.7581 CaO19.7581 CaO19.7673 CaO19.7673 SMD3 SMD3 YHC1 YHC1 CaO19.1045 CaO19.1045 PRP28 PRP28 CaO19.2230 CaO19.2230 CaO19.1975 CaO19.1975 PRP8 PRP8 LEA1 LEA1 RSE1 RSE1 SNU71 SNU71
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BUD31U2 snRNP complex subunit. (150 aa)
CaO19.6356U4/U6-U5 snRNP complex subunit. (911 aa)
CaO19.7256RNA-binding protein. (77 aa)
CaO19.7265mRNA splicing protein. (242 aa)
CaO19.7266Uncharacterized protein. (104 aa)
CaO19.2112mRNA splicing protein. (270 aa)
CaO19.1548U4/U6-U5 snRNP complex subunit. (242 aa)
A0A1D8PH20Small nuclear ribonucleoprotein G. (74 aa)
SMD2Small nuclear ribonucleoprotein Sm D2. (112 aa)
CaO19.82U4/U6-U5 snRNP complex subunit. (569 aa)
CaO19.2261U2 snRNP complex subunit. (259 aa)
CaO19.6989RRM domain-containing protein. (107 aa)
CaO19.7375Uncharacterized protein. (204 aa)
CaO19.3098ATP-dependent RNA helicase. (1987 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (146 aa)
CaO19.4326U4/U6-U5 snRNP complex subunit. (673 aa)
A0A1D8PNP9Sm-like protein. (123 aa)
A0A1D8PPC8Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (86 aa)
CaO19.5767U2 snRNP complex subunit. (283 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (130 aa)
LSM6U4/U6-U5 snRNP complex subunit. (80 aa)
CaO19.7460tRNA:m4X modification enzyme. (410 aa)
SNP3U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
CaO19.2368U5 snRNP complex subunit. (414 aa)
SMX4U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
CaO19.2621mRNA splicing protein. (125 aa)
CaO19.7343U4/U6-U5 snRNP complex subunit. (458 aa)
CaO19.7581U2 snRNP complex subunit. (471 aa)
CaO19.7673Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (116 aa)
SMD3Small nuclear ribonucleoprotein Sm D3. (106 aa)
YHC1U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (150 aa)
CaO19.1045U2 snRNP complex subunit. (353 aa)
PRP28Pre-mRNA-splicing ATP-dependent RNA helicase PRP28; ATP-dependent RNA helicase involved in mRNA splicing. May destabilize the U1/5'-splice site duplex to permit an effective competition for the 5'-splice site by the U6 snRNA, resulting in the switch between U1 and U6 at the 5'-splice site. May also act to unwind the U4/U6 base-pairing interaction in the U4/U6/U5 snRNP, facilitating the first covalent step of splicing (By similarity). (581 aa)
CaO19.2230U2 snRNP complex subunit. (119 aa)
CaO19.1975Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family. (148 aa)
PRP8U4/U6-U5 snRNP complex subunit. (2416 aa)
LEA1U2 small nuclear ribonucleoprotein A; Involved in pre-mRNA splicing. (233 aa)
RSE1Pre-mRNA-splicing factor RSE1; Involved in pre-mRNA splicing and cell cycle control. (1219 aa)
SNU71U1 small nuclear ribonucleoprotein component SNU71; Component of the U1 snRNP particle, which recognizes and binds the 5'-splice site of pre-mRNA. Together with other non-snRNP factors, U1 snRNP forms the spliceosomal commitment complex, that targets pre-mRNA to the splicing pathway (By similarity). (614 aa)
Your Current Organism:
Candida albicans
NCBI taxonomy Id: 237561
Other names: C. albicans SC5314, Candida albicans SC5314
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