(11 nodes) Zinc finger, PHD-type, conserved site network (Candida albicans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	YNG2	Chromatin modification-related protein YNG2; Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. The NuA4 complex is also involved in DNA repair. Involved in cell cycle progression and meiosis (By similarity); Belongs to the ING family. (298 aa)
	JHD1	JmjC domain-containing histone demethylation protein 1; Histone demethylase that specifically demethylates 'Lys-36' of histone H3, thereby playing a central role in histone code. (478 aa)
	CaO19.2229	Ubiquitin-protein ligase. (548 aa)
	CaO19.6506	PHD-type domain-containing protein. (688 aa)
	CaO19.5617	PHD domain-containing protein. (479 aa)
	CaO19.5651	Histone demethylase. (723 aa)
	PHO23	Chromatin modification-related protein. (481 aa)
	CaO19.2476	Uncharacterized protein. (1684 aa)
	SET3	Histone-binding protein. (1069 aa)
	CaO19.5910	Uncharacterized protein. (759 aa)
	SPP1	Spp1p. (406 aa)

Your Current Organism:

Candida albicans

NCBI taxonomy Id: 237561
Other names: C. albicans SC5314, Candida albicans SC5314

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CaO19.2476	CaO19.6506	A0A1D8PDM2	A0A1D8PR21	Uncharacterized protein.	PHD-type domain-containing protein.	0.563
CaO19.2476	JHD1	A0A1D8PDM2	Q5A847	Uncharacterized protein.	JmjC domain-containing histone demethylation protein 1; Histone demethylase that specifically demethylates 'Lys-36' of histone H3, thereby playing a central role in histone code.	0.456
CaO19.5617	CaO19.6506	A0A1D8PQ51	A0A1D8PR21	PHD domain-containing protein.	PHD-type domain-containing protein.	0.682
CaO19.5617	PHO23	A0A1D8PQ51	A0A1D8PIP3	PHD domain-containing protein.	Chromatin modification-related protein.	0.617
CaO19.5617	SET3	A0A1D8PQ51	A0A1D8PFV9	PHD domain-containing protein.	Histone-binding protein.	0.610
CaO19.5651	CaO19.6506	A0A1D8PL24	A0A1D8PR21	Histone demethylase.	PHD-type domain-containing protein.	0.563
CaO19.5651	JHD1	A0A1D8PL24	Q5A847	Histone demethylase.	JmjC domain-containing histone demethylation protein 1; Histone demethylase that specifically demethylates 'Lys-36' of histone H3, thereby playing a central role in histone code.	0.456
CaO19.5910	PHO23	Q5ANJ1	A0A1D8PIP3	Uncharacterized protein.	Chromatin modification-related protein.	0.519
CaO19.5910	YNG2	Q5ANJ1	Q5AHB8	Uncharacterized protein.	Chromatin modification-related protein YNG2; Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. The NuA4 complex is also involved in DNA repair. Involved in cell cycle progression and meiosis (By similarity); Belongs to the ING family.	0.517
CaO19.6506	CaO19.2476	A0A1D8PR21	A0A1D8PDM2	PHD-type domain-containing protein.	Uncharacterized protein.	0.563
CaO19.6506	CaO19.5617	A0A1D8PR21	A0A1D8PQ51	PHD-type domain-containing protein.	PHD domain-containing protein.	0.682
CaO19.6506	CaO19.5651	A0A1D8PR21	A0A1D8PL24	PHD-type domain-containing protein.	Histone demethylase.	0.563
CaO19.6506	PHO23	A0A1D8PR21	A0A1D8PIP3	PHD-type domain-containing protein.	Chromatin modification-related protein.	0.647
JHD1	CaO19.2476	Q5A847	A0A1D8PDM2	JmjC domain-containing histone demethylation protein 1; Histone demethylase that specifically demethylates 'Lys-36' of histone H3, thereby playing a central role in histone code.	Uncharacterized protein.	0.456
JHD1	CaO19.5651	Q5A847	A0A1D8PL24	JmjC domain-containing histone demethylation protein 1; Histone demethylase that specifically demethylates 'Lys-36' of histone H3, thereby playing a central role in histone code.	Histone demethylase.	0.456
PHO23	CaO19.5617	A0A1D8PIP3	A0A1D8PQ51	Chromatin modification-related protein.	PHD domain-containing protein.	0.617
PHO23	CaO19.5910	A0A1D8PIP3	Q5ANJ1	Chromatin modification-related protein.	Uncharacterized protein.	0.519
PHO23	CaO19.6506	A0A1D8PIP3	A0A1D8PR21	Chromatin modification-related protein.	PHD-type domain-containing protein.	0.647
SET3	CaO19.5617	A0A1D8PFV9	A0A1D8PQ51	Histone-binding protein.	PHD domain-containing protein.	0.610
YNG2	CaO19.5910	Q5AHB8	Q5ANJ1	Chromatin modification-related protein YNG2; Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. The NuA4 complex is also involved in DNA repair. Involved in cell cycle progression and meiosis (By similarity); Belongs to the ING family.	Uncharacterized protein.	0.517