14 items (Ustilago maydis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	UMAG_02966	Chromosome 7, whole genome shotgun sequence. (368 aa)
	UMAG_02903	Chromosome 7, whole genome shotgun sequence. (249 aa)
	UMAG_10143	Putative TATA-binding protein. (239 aa)
	UMAG_01595	RPOL4c domain-containing protein. (275 aa)
	UMAG_06156	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1400 aa)
	UMAG_04870	Uncharacterized protein. (559 aa)
	UMAG_03058	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (715 aa)
	UMAG_11550	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (109 aa)
	UMAG_02446	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1169 aa)
	UMAG_10785	Uncharacterized protein. (540 aa)
	UMAG_02059	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (207 aa)
	UMAG_10166	Putative DNA-directed RNA polymerases I and III subunit protein. (397 aa)
	UMAG_00491	Chromosome 1, whole genome shotgun sequence. (765 aa)
	UMAG_00808	Chromosome 1, whole genome shotgun sequence. (967 aa)

Your Current Organism:

Ustilago maydis

NCBI taxonomy Id: 237631
Other names: U. maydis 521, Ustilago maydis 521

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
UMAG_00491	UMAG_00808	A0A0D1E8E7	A0A0D1EB25	Chromosome 1, whole genome shotgun sequence.	Chromosome 1, whole genome shotgun sequence.	0.996
UMAG_00491	UMAG_01595	A0A0D1E8E7	A0A0D1CVH2	Chromosome 1, whole genome shotgun sequence.	RPOL4c domain-containing protein.	0.919
UMAG_00491	UMAG_02059	A0A0D1E8E7	A0A0D1E570	Chromosome 1, whole genome shotgun sequence.	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	0.839
UMAG_00491	UMAG_02446	A0A0D1E8E7	A0A0D1E1A2	Chromosome 1, whole genome shotgun sequence.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.959
UMAG_00491	UMAG_02903	A0A0D1E8E7	A0A0D1CQQ3	Chromosome 1, whole genome shotgun sequence.	Chromosome 7, whole genome shotgun sequence.	0.902
UMAG_00491	UMAG_02966	A0A0D1E8E7	A0A0D1C5R5	Chromosome 1, whole genome shotgun sequence.	Chromosome 7, whole genome shotgun sequence.	0.912
UMAG_00491	UMAG_03058	A0A0D1E8E7	A0A0D1DYD4	Chromosome 1, whole genome shotgun sequence.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.938
UMAG_00491	UMAG_04870	A0A0D1E8E7	A0A0D1DW92	Chromosome 1, whole genome shotgun sequence.	Uncharacterized protein.	0.921
UMAG_00491	UMAG_06156	A0A0D1E8E7	A0A0D1DT74	Chromosome 1, whole genome shotgun sequence.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.965
UMAG_00491	UMAG_10143	A0A0D1E8E7	A0A0D1CTQ8	Chromosome 1, whole genome shotgun sequence.	Putative TATA-binding protein.	0.999
UMAG_00491	UMAG_10166	A0A0D1E8E7	A0A0D1E6I1	Chromosome 1, whole genome shotgun sequence.	Putative DNA-directed RNA polymerases I and III subunit protein.	0.937
UMAG_00491	UMAG_10785	A0A0D1E8E7	A0A0D1E352	Chromosome 1, whole genome shotgun sequence.	Uncharacterized protein.	0.982
UMAG_00491	UMAG_11550	A0A0D1E8E7	A0A0D1DYK5	Chromosome 1, whole genome shotgun sequence.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.843
UMAG_00808	UMAG_00491	A0A0D1EB25	A0A0D1E8E7	Chromosome 1, whole genome shotgun sequence.	Chromosome 1, whole genome shotgun sequence.	0.996
UMAG_00808	UMAG_01595	A0A0D1EB25	A0A0D1CVH2	Chromosome 1, whole genome shotgun sequence.	RPOL4c domain-containing protein.	0.932
UMAG_00808	UMAG_02059	A0A0D1EB25	A0A0D1E570	Chromosome 1, whole genome shotgun sequence.	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	0.876
UMAG_00808	UMAG_02446	A0A0D1EB25	A0A0D1E1A2	Chromosome 1, whole genome shotgun sequence.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.942
UMAG_00808	UMAG_02903	A0A0D1EB25	A0A0D1CQQ3	Chromosome 1, whole genome shotgun sequence.	Chromosome 7, whole genome shotgun sequence.	0.913
UMAG_00808	UMAG_02966	A0A0D1EB25	A0A0D1C5R5	Chromosome 1, whole genome shotgun sequence.	Chromosome 7, whole genome shotgun sequence.	0.960
UMAG_00808	UMAG_03058	A0A0D1EB25	A0A0D1DYD4	Chromosome 1, whole genome shotgun sequence.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.932