STRINGSTRING
UMAG_04192 UMAG_04192 UMAG_10524 UMAG_10524 UMAG_06377 UMAG_06377 UMAG_11314 UMAG_11314 UMAG_01067 UMAG_01067 UMAG_02819 UMAG_02819 UMAG_10655 UMAG_10655 PAB1 PAB1 DBP5 DBP5 PRT1 PRT1 NIP1 NIP1 UMAG_11248 UMAG_11248 UMAG_11017 UMAG_11017 UMAG_02637 UMAG_02637 UMAG_12199 UMAG_12199 UMAG_03967 UMAG_03967 UMAG_01182 UMAG_01182 UMAG_01013 UMAG_01013 UMAG_11685 UMAG_11685 UMAG_11794 UMAG_11794
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
UMAG_04192Chromosome 12, whole genome shotgun sequence. (438 aa)
UMAG_10524MI domain-containing protein. (1572 aa)
UMAG_06377Chromosome 23, whole genome shotgun sequence; Belongs to the eukaryotic initiation factor 4E family. (280 aa)
UMAG_11314Uncharacterized protein. (174 aa)
UMAG_010675'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins. (1478 aa)
UMAG_02819Chromosome 7, whole genome shotgun sequence. (332 aa)
UMAG_10655Chromosome 8, whole genome shotgun sequence; Belongs to the DEAD box helicase family. (488 aa)
PAB1Polyadenylate-binding protein, cytoplasmic and nuclear; Binds the poly(A) tail of mRNA. Appears to be an important mediator of the multiple roles of the poly(A) tail in mRNA biogenesis, stability and translation. In the nucleus, involved in both mRNA cleavage and polyadenylation. Is also required for efficient mRNA export to the cytoplasm. Acts in concert with a poly(A)-specific nuclease (PAN) to affect poly(A) tail shortening, which may occur concomitantly with either nucleocytoplasmic mRNA transport or translational initiation. In the cytoplasm, stimulates translation initiation and [...] (651 aa)
DBP5ATP-dependent RNA helicase DBP5; ATP-dependent RNA helicase associated with the nuclear pore complex and essential for mRNA export from the nucleus. May participate in a terminal step of mRNA export through the removal of proteins that accompany mRNA through the nucleopore complex. May also be involved in early transcription (By similarity). (456 aa)
PRT1Eukaryotic translation initiation factor 3 subunit B; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (745 aa)
NIP1Eukaryotic translation initiation factor 3 subunit C; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (895 aa)
UMAG_11248Uncharacterized protein. (497 aa)
UMAG_11017Chromosome 8, whole genome shotgun sequence. (482 aa)
UMAG_02637LsmAD domain-containing protein. (1049 aa)
UMAG_12199Chromosome 7, whole genome shotgun sequence. (410 aa)
UMAG_03967PAT1 domain-containing protein. (920 aa)
UMAG_01182Uncharacterized protein. (442 aa)
UMAG_01013HTH La-type RNA-binding domain-containing protein. (1052 aa)
UMAG_11685AD domain-containing protein. (266 aa)
UMAG_11794Uncharacterized protein. (466 aa)
Your Current Organism:
Ustilago maydis
NCBI taxonomy Id: 237631
Other names: U. maydis 521, Ustilago maydis 521
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