(6 nodes) Coenzyme A metabolic process network (Ustilago maydis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	UMAG_15002	3-hydroxy-3-methylglutaryl coenzyme A reductase. (1443 aa)
	UMAG_12289	Chromosome 15, whole genome shotgun sequence. (280 aa)
	UMAG_12246	Nudix hydrolase domain-containing protein. (308 aa)
	UMAG_10979	Uncharacterized protein. (775 aa)
	UMAG_10332	Chromosome 7, whole genome shotgun sequence. (539 aa)
	UMAG_03699	Chromosome 10, whole genome shotgun sequence. (369 aa)

Your Current Organism:

Ustilago maydis

NCBI taxonomy Id: 237631
Other names: U. maydis 521, Ustilago maydis 521

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
UMAG_03699	UMAG_10979	A0A0D1E050	A0A0D1DPC6	Chromosome 10, whole genome shotgun sequence.	Uncharacterized protein.	0.982
UMAG_03699	UMAG_12289	A0A0D1E050	A0A0D1DWY4	Chromosome 10, whole genome shotgun sequence.	Chromosome 15, whole genome shotgun sequence.	0.756
UMAG_10979	UMAG_03699	A0A0D1DPC6	A0A0D1E050	Uncharacterized protein.	Chromosome 10, whole genome shotgun sequence.	0.982
UMAG_10979	UMAG_12289	A0A0D1DPC6	A0A0D1DWY4	Uncharacterized protein.	Chromosome 15, whole genome shotgun sequence.	0.609
UMAG_12289	UMAG_03699	A0A0D1DWY4	A0A0D1E050	Chromosome 15, whole genome shotgun sequence.	Chromosome 10, whole genome shotgun sequence.	0.756
UMAG_12289	UMAG_10979	A0A0D1DWY4	A0A0D1DPC6	Chromosome 15, whole genome shotgun sequence.	Uncharacterized protein.	0.609