4 items (Ustilago maydis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	UMAG_11794	Uncharacterized protein. (466 aa)
	UMAG_01182	Uncharacterized protein. (442 aa)
	UMAG_10655	Chromosome 8, whole genome shotgun sequence; Belongs to the DEAD box helicase family. (488 aa)
	UMAG_02637	LsmAD domain-containing protein. (1049 aa)

Your Current Organism:

Ustilago maydis

NCBI taxonomy Id: 237631
Other names: U. maydis 521, Ustilago maydis 521

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
UMAG_01182	UMAG_02637	A0A0D1CDX8	A0A0D1DZ34	Uncharacterized protein.	LsmAD domain-containing protein.	0.547
UMAG_01182	UMAG_10655	A0A0D1CDX8	A0A0D1CQ54	Uncharacterized protein.	Chromosome 8, whole genome shotgun sequence; Belongs to the DEAD box helicase family.	0.465
UMAG_02637	UMAG_01182	A0A0D1DZ34	A0A0D1CDX8	LsmAD domain-containing protein.	Uncharacterized protein.	0.547
UMAG_02637	UMAG_10655	A0A0D1DZ34	A0A0D1CQ54	LsmAD domain-containing protein.	Chromosome 8, whole genome shotgun sequence; Belongs to the DEAD box helicase family.	0.925
UMAG_02637	UMAG_11794	A0A0D1DZ34	A0A0D1BXC9	LsmAD domain-containing protein.	Uncharacterized protein.	0.493
UMAG_10655	UMAG_01182	A0A0D1CQ54	A0A0D1CDX8	Chromosome 8, whole genome shotgun sequence; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.465
UMAG_10655	UMAG_02637	A0A0D1CQ54	A0A0D1DZ34	Chromosome 8, whole genome shotgun sequence; Belongs to the DEAD box helicase family.	LsmAD domain-containing protein.	0.925
UMAG_10655	UMAG_11794	A0A0D1CQ54	A0A0D1BXC9	Chromosome 8, whole genome shotgun sequence; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.997
UMAG_11794	UMAG_02637	A0A0D1BXC9	A0A0D1DZ34	Uncharacterized protein.	LsmAD domain-containing protein.	0.493
UMAG_11794	UMAG_10655	A0A0D1BXC9	A0A0D1CQ54	Uncharacterized protein.	Chromosome 8, whole genome shotgun sequence; Belongs to the DEAD box helicase family.	0.997