STRINGSTRING
UMAG_10166 UMAG_10166 UMAG_10936 UMAG_10936 UMAG_04902 UMAG_04902 UMAG_04722 UMAG_04722 UMAG_06156 UMAG_06156 UMAG_10429 UMAG_10429 UMAG_04529 UMAG_04529 UMAG_10359 UMAG_10359 UMAG_10431 UMAG_10431 UMAG_04870 UMAG_04870 UMAG_03680 UMAG_03680 UMAG_03852 UMAG_03852 UMAG_04390 UMAG_04390 UMAG_04610 UMAG_04610 UMAG_15003 UMAG_15003 UMAG_03058 UMAG_03058 UMAG_11550 UMAG_11550 UMAG_02557 UMAG_02557 UMAG_10433 UMAG_10433 UMAG_03079 UMAG_03079 UMAG_03802 UMAG_03802 UMAG_10512 UMAG_10512 UMAG_02400 UMAG_02400 UMAG_02324 UMAG_02324 UMAG_05183 UMAG_05183 UMAG_04151 UMAG_04151 UMAG_03061 UMAG_03061 UMAG_02903 UMAG_02903 UMAG_10656 UMAG_10656 UMAG_03584 UMAG_03584 UMAG_03550 UMAG_03550 UMAG_10482 UMAG_10482 UMAG_04069 UMAG_04069 UMAG_04460 UMAG_04460 UMAG_10858 UMAG_10858 UMAG_04830 UMAG_04830 UMAG_10751 UMAG_10751 UMAG_05334 UMAG_05334 UMAG_11435 UMAG_11435 UMAG_10620 UMAG_10620 UMAG_11705 UMAG_11705 UMAG_02966 UMAG_02966 UMAG_03863 UMAG_03863 UMAG_10785 UMAG_10785 CCR4 CCR4 TFB5 TFB5 UMAG_00741 UMAG_00741 UMAG_01529 UMAG_01529 UMAG_10194 UMAG_10194 UMAG_01104 UMAG_01104 UMAG_10551 UMAG_10551 UMAG_01363 UMAG_01363 UMAG_01184 UMAG_01184 UMAG_01133 UMAG_01133 UMAG_02059 UMAG_02059 UMAG_00922 UMAG_00922 UMAG_02628 UMAG_02628 UMAG_02619 UMAG_02619 UMAG_02605 UMAG_02605 UMAG_10143 UMAG_10143 UMAG_05127 UMAG_05127 UMAG_05151 UMAG_05151 UMAG_06296 UMAG_06296 UMAG_01595 UMAG_01595 UMAG_00669 UMAG_00669 UMAG_06378 UMAG_06378 UMAG_06387 UMAG_06387 UMAG_06206 UMAG_06206 UMAG_06237 UMAG_06237 UMAG_05410 UMAG_05410 UMAG_11192 UMAG_11192
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
UMAG_10166Putative DNA-directed RNA polymerases I and III subunit protein. (397 aa)
UMAG_10936Chromosome 16, whole genome shotgun sequence. (71 aa)
UMAG_04902Chromosome 15, whole genome shotgun sequence; Belongs to the protein kinase superfamily. (379 aa)
UMAG_04722RPOL4c domain-containing protein. (175 aa)
UMAG_06156DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1400 aa)
UMAG_10429DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1241 aa)
UMAG_04529DNA polymerase. (1667 aa)
UMAG_10359DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (133 aa)
UMAG_10431Chromosome 12, whole genome shotgun sequence. (760 aa)
UMAG_04870Uncharacterized protein. (559 aa)
UMAG_03680Chromosome 10, whole genome shotgun sequence. (433 aa)
UMAG_03852DNA primase large subunit; DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication; Belongs to the eukaryotic-type primase large subunit family. (543 aa)
UMAG_04390RRM domain-containing protein. (390 aa)
UMAG_04610Uncharacterized protein. (703 aa)
UMAG_15003Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (756 aa)
UMAG_03058RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (715 aa)
UMAG_11550DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (109 aa)
UMAG_02557DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (764 aa)
UMAG_10433Chromosome 12, whole genome shotgun sequence. (138 aa)
UMAG_03079Chromosome 7, whole genome shotgun sequence. (1046 aa)
UMAG_03802Chromosome 10, whole genome shotgun sequence. (701 aa)
UMAG_10512Chromosome 10, whole genome shotgun sequence. (208 aa)
UMAG_02400BTP domain-containing protein. (793 aa)
UMAG_02324RNA_pol_L_2 domain-containing protein. (145 aa)
UMAG_05183Uncharacterized protein. (214 aa)
UMAG_04151Chromosome 12, whole genome shotgun sequence. (850 aa)
UMAG_03061Chromosome 7, whole genome shotgun sequence. (432 aa)
UMAG_02903Chromosome 7, whole genome shotgun sequence. (249 aa)
UMAG_10656DNA primase; Belongs to the eukaryotic-type primase small subunit family. (492 aa)
UMAG_03584Chromosome 9, whole genome shotgun sequence. (520 aa)
UMAG_03550Chromosome 9, whole genome shotgun sequence. (329 aa)
UMAG_10482Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (116 aa)
UMAG_04069Putative TFIIH/NER complex ATPase/helicase subunit SSL2. (940 aa)
UMAG_04460DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (161 aa)
UMAG_10858DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (129 aa)
UMAG_04830Uncharacterized protein. (617 aa)
UMAG_10751BSD domain-containing protein. (679 aa)
UMAG_05334Chromosome 19, whole genome shotgun sequence. (170 aa)
UMAG_11435Chromosome 1, whole genome shotgun sequence. (319 aa)
UMAG_10620TAFII55_N domain-containing protein. (621 aa)
UMAG_11705TFIID_20kDa domain-containing protein. (777 aa)
UMAG_02966Chromosome 7, whole genome shotgun sequence. (368 aa)
UMAG_03863DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1774 aa)
UMAG_10785Uncharacterized protein. (540 aa)
CCR4Glucose-repressible alcohol dehydrogenase transcriptional effector; Acts as catalytic component of the CCR4-NOT core complex, which in the nucleus seems to be a general transcription factor, and in the cytoplasm the major mRNA deadenylase involved in mRNA turnover. Ccr4 has 3'-5' RNase activity with a strong preference for polyadenylated substrates and also low exonuclease activity towards single-stranded DNA. Discovered because of its role in the control of ADH2 gene expression. It is required for the expression of genes involved in non-fermentative growth (By similarity); Belongs to [...] (670 aa)
TFB5General transcription and DNA repair factor IIH subunit TFB5; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II. In NER, TFIIH acts by opening DNA around the lesion to allow the excision of the damaged oligonucleotide and its replacement by a new DNA fragment. In transcription, TFIIH has an essential role in transcription initiation. When the pre-initiation complex (PIC) has be [...] (65 aa)
UMAG_00741Chromosome 1, whole genome shotgun sequence. (1214 aa)
UMAG_01529CBS domain-containing protein. (386 aa)
UMAG_10194Putative DNA-directed RNA polymerase core subunit RPB10. (71 aa)
UMAG_01104Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (256 aa)
UMAG_10551General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (516 aa)
UMAG_01363Uncharacterized protein. (364 aa)
UMAG_01184RNA_pol_L_2 domain-containing protein. (164 aa)
UMAG_01133DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1289 aa)
UMAG_02059DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (207 aa)
UMAG_00922Uncharacterized protein. (422 aa)
UMAG_02628DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1795 aa)
UMAG_02619Uncharacterized protein. (1846 aa)
UMAG_02605PHD domain-containing protein. (1084 aa)
UMAG_10143Putative TATA-binding protein. (239 aa)
UMAG_05127Uncharacterized protein. (466 aa)
UMAG_05151CYCLIN domain-containing protein; Belongs to the cyclin family. (493 aa)
UMAG_06296RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (491 aa)
UMAG_01595RPOL4c domain-containing protein. (275 aa)
UMAG_00669Chromosome 1, whole genome shotgun sequence. (401 aa)
UMAG_06378Chromosome 23, whole genome shotgun sequence. (689 aa)
UMAG_06387Chromosome 23, whole genome shotgun sequence. (273 aa)
UMAG_06206TAF4 domain-containing protein. (452 aa)
UMAG_06237Uncharacterized protein. (1441 aa)
UMAG_05410Chromosome 19, whole genome shotgun sequence. (598 aa)
UMAG_11192TAFII28 domain-containing protein. (460 aa)
Your Current Organism:
Ustilago maydis
NCBI taxonomy Id: 237631
Other names: U. maydis 521, Ustilago maydis 521
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