STRINGSTRING
UMAG_00439 UMAG_00439 SRB8 SRB8 HAT2 HAT2 POB3 POB3 SWC5 SWC5 RVB2 RVB2 EAF3 EAF3 TFB5 TFB5 SPB4 SPB4 SSN3 SSN3 NUT1 NUT1 SET1 SET1 SET2 SET2 MRD1 MRD1 RNA14 RNA14 NUT2 NUT2 YSH1 YSH1 REX4 REX4 YAF9 YAF9 SWC4 SWC4 MED6 MED6 IPI3 IPI3 SPT5 SPT5 TSD2 TSD2 SSN8 SSN8 RVB1 RVB1 FEN1 FEN1 ARP4 ARP4 SPT16 SPT16 MED7 MED7 SOH1 SOH1 SWR1 SWR1 YTH1 YTH1 UMAG_10925 UMAG_10925 UMAG_11435 UMAG_11435 UMAG_11189 UMAG_11189 UMAG_11203 UMAG_11203 UMAG_10101 UMAG_10101 UMAG_11805 UMAG_11805 UMAG_00321 UMAG_00321 UMAG_00290 UMAG_00290 UMAG_11308 UMAG_11308 UMAG_00983 UMAG_00983 UMAG_12055 UMAG_12055 UMAG_10620 UMAG_10620 UMAG_01688 UMAG_01688 UMAG_15076 UMAG_15076 UMAG_05184 UMAG_05184 UMAG_02469 UMAG_02469 UMAG_10142 UMAG_10142 UMAG_11705 UMAG_11705 UMAG_02260 UMAG_02260 UMAG_02056 UMAG_02056 UMAG_02961 UMAG_02961 UMAG_02917 UMAG_02917 UMAG_11480 UMAG_11480 UMAG_03614 UMAG_03614 UMAG_03863 UMAG_03863 UMAG_03928 UMAG_03928 UMAG_10405 UMAG_10405 UMAG_04131 UMAG_04131 UMAG_04346 UMAG_04346 UMAG_04950 UMAG_04950 UMAG_04925 UMAG_04925 UMAG_15084 UMAG_15084 UMAG_04878 UMAG_04878 UMAG_04723 UMAG_04723 UMAG_05376 UMAG_05376 UMAG_04069 UMAG_04069 UMAG_11967 UMAG_11967 UMAG_11126 UMAG_11126 UMAG_04581 UMAG_04581 UMAG_04551 UMAG_04551 UMAG_04475 UMAG_04475 UMAG_04465 UMAG_04465 UMAG_04460 UMAG_04460 UMAG_04384 UMAG_04384 UMAG_10854 UMAG_10854 UMAG_04830 UMAG_04830 UMAG_10751 UMAG_10751 UMAG_10221 UMAG_10221 UMAG_05363 UMAG_05363 UMAG_05334 UMAG_05334 UMAG_10482 UMAG_10482 UMAG_15082 UMAG_15082 UMAG_03743 UMAG_03743 UMAG_03793 UMAG_03793 UMAG_03550 UMAG_03550 UMAG_03244 UMAG_03244 UMAG_10317 UMAG_10317 UMAG_03061 UMAG_03061 UMAG_02072 UMAG_02072 UMAG_10071 UMAG_10071 UMAG_05127 UMAG_05127 UMAG_05151 UMAG_05151 UMAG_11783 UMAG_11783 UMAG_06296 UMAG_06296 UMAG_12168 UMAG_12168 UMAG_01883 UMAG_01883 UMAG_01149 UMAG_01149 UMAG_11302 UMAG_11302 UMAG_10594 UMAG_10594 UMAG_00114 UMAG_00114 UMAG_00183 UMAG_00183 UMAG_00328 UMAG_00328 UMAG_00586 UMAG_00586 UMAG_00625 UMAG_00625 UMAG_11828 UMAG_11828 UMAG_00669 UMAG_00669 UMAG_00706 UMAG_00706 UMAG_11297 UMAG_11297 UMAG_06210 UMAG_06210 UMAG_11235 UMAG_11235 UMAG_06249 UMAG_06249 UMAG_06037 UMAG_06037 UMAG_06378 UMAG_06378 UMAG_06387 UMAG_06387 UMAG_11038 UMAG_11038 UMAG_06206 UMAG_06206 UMAG_11227 UMAG_11227 UMAG_06237 UMAG_06237 UMAG_10549 UMAG_10549 UMAG_06029 UMAG_06029 UMAG_05410 UMAG_05410 UMAG_11192 UMAG_11192 UMAG_05827 UMAG_05827 UMAG_11029 UMAG_11029 UMAG_10551 UMAG_10551 UMAG_10723 UMAG_10723 UMAG_10936 UMAG_10936 UMAG_04902 UMAG_04902 UMAG_04722 UMAG_04722 UMAG_04927 UMAG_04927 UMAG_12008 UMAG_12008 UMAG_10843 UMAG_10843 UMAG_15022 UMAG_15022 UMAG_04518 UMAG_04518 UMAG_06358 UMAG_06358 UMAG_04609 UMAG_04609 UMAG_04944 UMAG_04944 UMAG_04168 UMAG_04168 UMAG_04317 UMAG_04317 UMAG_10429 UMAG_10429 UMAG_05888 UMAG_05888 UMAG_04055 UMAG_04055 UMAG_04098 UMAG_04098 UMAG_11575 UMAG_11575 UMAG_10662 UMAG_10662 UMAG_04234 UMAG_04234 UMAG_10349 UMAG_10349 UMAG_10359 UMAG_10359 UMAG_04269 UMAG_04269 UMAG_15099 UMAG_15099 UMAG_04711 UMAG_04711 UMAG_11736 UMAG_11736 UMAG_03977 UMAG_03977 UMAG_05633 UMAG_05633 UMAG_03626 UMAG_03626 UMAG_10393 UMAG_10393 UMAG_10399 UMAG_10399 UMAG_03680 UMAG_03680 UMAG_12222 UMAG_12222 UMAG_10845 UMAG_10845 UMAG_04344 UMAG_04344 UMAG_03520 UMAG_03520 UMAG_04472 UMAG_04472 UMAG_04610 UMAG_04610 UMAG_15003 UMAG_15003 UMAG_03274 UMAG_03274 UMAG_03304 UMAG_03304 UMAG_02530 UMAG_02530 UMAG_03386 UMAG_03386 UMAG_10433 UMAG_10433 UMAG_12194 UMAG_12194 UMAG_10602 UMAG_10602 UMAG_03079 UMAG_03079 UMAG_03802 UMAG_03802 UMAG_10512 UMAG_10512 UMAG_02065 UMAG_02065 UMAG_02400 UMAG_02400 UMAG_02102 UMAG_02102 UMAG_03496 UMAG_03496 UMAG_03543 UMAG_03543 UMAG_02324 UMAG_02324 UMAG_02420 UMAG_02420 UMAG_02478 UMAG_02478 UMAG_11881 UMAG_11881 UMAG_05183 UMAG_05183 UMAG_02881 UMAG_02881 UMAG_05213 UMAG_05213 UMAG_02925 UMAG_02925 UMAG_06294 UMAG_06294 UMAG_10318 UMAG_10318 UMAG_11947 UMAG_11947 UMAG_01626 UMAG_01626 UMAG_02619 UMAG_02619 UMAG_01696 UMAG_01696 UMAG_10570 UMAG_10570 UMAG_11717 UMAG_11717 UMAG_11727 UMAG_11727 UMAG_00922 UMAG_00922 UMAG_12353 UMAG_12353 UMAG_01961 UMAG_01961 UMAG_00981 UMAG_00981 UMAG_01969 UMAG_01969 UMAG_01093 UMAG_01093 UMAG_00878 UMAG_00878 UMAG_00913 UMAG_00913 UMAG_10626 UMAG_10626 UMAG_01307 UMAG_01307 UMAG_02411 UMAG_02411 UMAG_02472 UMAG_02472 UMAG_01104 UMAG_01104 UMAG_05089 UMAG_05089 UMAG_10194 UMAG_10194 UMAG_00226 UMAG_00226 UMAG_01529 UMAG_01529 UMAG_01569 UMAG_01569 UMAG_00399 UMAG_00399 UMAG_00218 UMAG_00218 UMAG_00592 UMAG_00592 UMAG_00741 UMAG_00741 UMAG_10100 UMAG_10100 UMAG_00903 UMAG_00903 UMAG_10113 UMAG_10113 UMAG_00443 UMAG_00443 UMAG_00503 UMAG_00503 UMAG_11652 UMAG_11652 UMAG_01200 UMAG_01200 UMAG_01338 UMAG_01338 UMAG_00810 UMAG_00810 UMAG_12153 UMAG_12153 UMAG_00492 UMAG_00492 UMAG_00598 UMAG_00598 SUS1 SUS1 RGR1 RGR1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
UMAG_00439Chromosome 1, whole genome shotgun sequence. (323 aa)
SRB8Mediator of RNA polymerase II transcription subunit 12; Component of the SRB8-11 complex. The SRB8-11 complex is a regulatory module of the Mediator complex which is itself involved in regulation of basal and activated RNA polymerase II-dependent transcription. The SRB8-11 complex may be involved in the transcriptional repression of a subset of genes regulated by Mediator. It may inhibit the association of the Mediator complex with RNA polymerase II to form the holoenzyme complex (By similarity). (1876 aa)
HAT2Histone acetyltransferase type B subunit 2; Regulatory subunit of the histone acetylase B (HAT-B) complex. The complex acetylates 'Lys-12' of histone H4 which is required for telomeric silencing. (433 aa)
POB3FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...] (558 aa)
SWC5SWR1-complex protein 5; Component of the SWR1 complex which mediates the ATP- dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Involved in chromosome stability (By similarity). (354 aa)
RVB2RuvB-like helicase 2; DNA helicase which participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. The SWR1 complex mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. The INO80 complex remodels chromatin by shifting nucleosomes and is involved in DNA repair. Also involved in pre-rRNA processing (By similarity); Belongs to the RuvB family. (476 aa)
EAF3Chromatin modification-related protein EAF3; Involved in deacetylation of histones, chromatin assembly and chromosome segregation. May act as a transcriptional oscillator, directing histone deacetylases to specific chromosomal domains. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. The NuA4 complex is also involved in DNA repair (By similarity). (330 aa)
TFB5General transcription and DNA repair factor IIH subunit TFB5; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II. In NER, TFIIH acts by opening DNA around the lesion to allow the excision of the damaged oligonucleotide and its replacement by a new DNA fragment. In transcription, TFIIH has an essential role in transcription initiation. When the pre-initiation complex (PIC) has be [...] (65 aa)
SPB4ATP-dependent rRNA helicase SPB4; ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits. Binds 90S pre-ribosomal particles and dissociates from pre-60S ribosomal particles after processing of 27SB pre-rRNA. Required for the normal formation of 18S rRNA through the processing of pre-rRNAs at sites A0, A1 and A2, and the normal formation of 25S and 5.8S rRNAs through the processing of pre-rRNAs at sites C1 and C2. (767 aa)
SSN3Serine/threonine-protein kinase SSN3; Component of the srb8-11 complex. The srb8-11 complex is a regulatory module of the Mediator complex which is itself dependent transcription. The srb8-11 complex may be involved in the transcriptional repression of a subset of genes regulated by Mediator. It may inhibit the association of the Mediator complex with RNA polymerase II to form the holoenzyme complex. The srb8-11 complex phosphorylates the C-terminal domain (CTD) of the largest subunit of RNA polymerase II (By similarity). (713 aa)
NUT1Mediator of RNA polymerase II transcription subunit 5; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity). (1237 aa)
SET1Histone-lysine N-methyltransferase, H3 lysine-4 specific; Catalytic component of the COMPASS (Set1C) complex that specifically mono-, di- and trimethylates histone H3 to form H3K4me1/2/3, which subsequently plays a role in telomere length maintenance and transcription elongation regulation. Belongs to the class V-like SAM-binding methyltransferase superfamily. (1468 aa)
SET2Histone-lysine N-methyltransferase, H3 lysine-36 specific; Histone methyltransferase that trimethylates histone H3 'Lys- 36' forming H3K36me3. Involved in transcription elongation as well as in transcription repression; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. SET2 subfamily. (972 aa)
MRD1Multiple RNA-binding domain-containing protein 1; Involved in pre-rRNA processing; Belongs to the RRM MRD1 family. (858 aa)
RNA14mRNA 3'-end-processing protein RNA14; Component of the cleavage factor IA (CFIA) complex, which is involved in the endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation. (945 aa)
NUT2Mediator of RNA polymerase II transcription subunit 10; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity). (197 aa)
YSH1Endoribonuclease YSH1; Component of the cleavage factor I (CF I) involved in pre- mRNA 3'-end processing; Belongs to the metallo-beta-lactamase superfamily. RNA- metabolizing metallo-beta-lactamase-like family. CPSF2/YSH1 subfamily. (880 aa)
REX4RNA exonuclease 4; Exoribonuclease involved in ribosome biosynthesis. Involved in the processing of ITS1, the internal transcribed spacer localized between the 18S and 5.8S rRNAs (By similarity); Belongs to the REXO4 family. (375 aa)
YAF9Protein AF-9 homolog; Component of the SWR1 complex which mediates the ATP- dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histones H4 and H2A. The NuA4 complex is also involved in DNA repair. Yaf9 may also be required for viability in conditions in which the structural integrity of the spindle is compromised (By similarity). (431 aa)
SWC4SWR1-complex protein 4; Component of the SWR1 complex which mediates the ATP- dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. The NuA4 complex is also involved in DNA repair (By similarity). (615 aa)
MED6Mediator of RNA polymerase II transcription subunit 6; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity). (254 aa)
IPI3Pre-rRNA-processing protein IPI3; Component of the RIX1 complex required for processing of ITS2 sequences from 35S pre-rRNA. (587 aa)
SPT5Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene (By similarity). (954 aa)
TSD2Protein TSD2; Temperature-sensitive protein required for DNA synthesis. May be a transcription factor that regulates the level or influences the stability of DNA polymerases or auxiliary proteins. (845 aa)
SSN8RNA polymerase II holoenzyme cyclin-like subunit; Component of the SRB8-11 complex. The SRB8-11 complex is a regulatory module of the Mediator complex which is itself involved in regulation of basal and activated RNA polymerase II-dependent transcription. The SRB8-11 complex may be involved in the transcriptional repression of a subset of genes regulated by Mediator. It may inhibit the association of the Mediator complex with RNA polymerase II to form the holoenzyme complex. The SRB8-11 complex phosphorylates the C-terminal domain (CTD) of the largest subunit of RNA polymerase II (By s [...] (393 aa)
RVB1RuvB-like helicase 1; DNA helicase which participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. The SWR1 complex mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. The INO80 complex remodels chromatin by shifting nucleosomes and is involved in DNA repair. Also involved in pre-rRNA processing (By similarity); Belongs to the RuvB family. (488 aa)
FEN1Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (374 aa)
ARP4Actin-related protein 4; Chromatin interaction component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. The NuA4 complex is also involved in DNA repair. Is required for NuA4 complex integrity. Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the INO80 complex which remodels chromatin by shifting nucleosomes [...] (534 aa)
SPT16FACT complex subunit SPT16; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (1032 aa)
MED7Mediator of RNA polymerase II transcription subunit 7; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity). (315 aa)
SOH1Mediator of RNA polymerase II transcription subunit 31; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity). (153 aa)
SWR1Helicase SWR1; Catalytic component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling; Belongs to the SNF2/RAD54 helicase family. SWR1 subfamily. (1830 aa)
YTH1mRNA 3'-end-processing protein YTH1; Component of the cleavage factor I (CF I) involved in pre- mRNA 3'-end processing; Belongs to the CPSF4/YTH1 family. (366 aa)
UMAG_10925Chromosome 1, whole genome shotgun sequence. (376 aa)
UMAG_11435Chromosome 1, whole genome shotgun sequence. (319 aa)
UMAG_11189Uncharacterized protein. (597 aa)
UMAG_11203Chromosome 21, whole genome shotgun sequence. (347 aa)
UMAG_10101Chromosome 1, whole genome shotgun sequence. (610 aa)
UMAG_11805Chromosome 21, whole genome shotgun sequence. (1019 aa)
UMAG_00321Chromosome 1, whole genome shotgun sequence. (622 aa)
UMAG_00290Chromosome 1, whole genome shotgun sequence. (1206 aa)
UMAG_11308Histone deacetylase. (585 aa)
UMAG_00983SANT domain-containing protein. (2193 aa)
UMAG_12055Skp1_POZ domain-containing protein; Belongs to the SKP1 family. (109 aa)
UMAG_10620TAFII55_N domain-containing protein. (621 aa)
UMAG_01688Uncharacterized protein. (664 aa)
UMAG_15076Uncharacterized protein. (346 aa)
UMAG_05184PWWP domain-containing protein. (348 aa)
UMAG_02469RRM domain-containing protein. (282 aa)
UMAG_10142Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (203 aa)
UMAG_11705TFIID_20kDa domain-containing protein. (777 aa)
UMAG_02260Uncharacterized protein. (1929 aa)
UMAG_02056Uncharacterized protein. (253 aa)
UMAG_02961Chromosome 7, whole genome shotgun sequence. (887 aa)
UMAG_02917Chromosome 7, whole genome shotgun sequence. (616 aa)
UMAG_11480Cleavage and polyadenylation specificity factor subunit 2. (1032 aa)
UMAG_03614Chromosome 9, whole genome shotgun sequence. (489 aa)
UMAG_03863DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1774 aa)
UMAG_03928Protein kinase domain-containing protein. (1239 aa)
UMAG_10405Chromosome 12, whole genome shotgun sequence. (635 aa)
UMAG_04131Chromosome 12, whole genome shotgun sequence. (492 aa)
UMAG_04346Uncharacterized protein. (1242 aa)
UMAG_04950Chromosome 15, whole genome shotgun sequence. (1114 aa)
UMAG_04925Chromosome 15, whole genome shotgun sequence. (887 aa)
UMAG_15084Chromosome 16, whole genome shotgun sequence. (490 aa)
UMAG_04878Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family. (5431 aa)
UMAG_04723Putative wd-repeat protein 5. (355 aa)
UMAG_05376Chromosome 19, whole genome shotgun sequence. (982 aa)
UMAG_04069Putative TFIIH/NER complex ATPase/helicase subunit SSL2. (940 aa)
UMAG_11967Uncharacterized protein. (815 aa)
UMAG_11126Chromosome 12, whole genome shotgun sequence. (865 aa)
UMAG_04581BHLH domain-containing protein. (392 aa)
UMAG_04551Uncharacterized protein; Belongs to the cyclin family. (704 aa)
UMAG_04475Uncharacterized protein. (859 aa)
UMAG_04465Bromo domain-containing protein. (803 aa)
UMAG_04460DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (161 aa)
UMAG_04384Uncharacterized protein. (277 aa)
UMAG_10854Uncharacterized protein. (949 aa)
UMAG_04830Uncharacterized protein. (617 aa)
UMAG_10751BSD domain-containing protein. (679 aa)
UMAG_10221Chromosome 19, whole genome shotgun sequence. (445 aa)
UMAG_05363Chromosome 19, whole genome shotgun sequence. (727 aa)
UMAG_05334Chromosome 19, whole genome shotgun sequence. (170 aa)
UMAG_10482Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (116 aa)
UMAG_15082Chromosome 10, whole genome shotgun sequence. (1851 aa)
UMAG_03743Chromosome 10, whole genome shotgun sequence; Belongs to the actin family. (732 aa)
UMAG_03793Chromosome 10, whole genome shotgun sequence. (632 aa)
UMAG_03550Chromosome 9, whole genome shotgun sequence. (329 aa)
UMAG_03244Chromatin modification-related protein. (732 aa)
UMAG_10317Chromosome 7, whole genome shotgun sequence. (401 aa)
UMAG_03061Chromosome 7, whole genome shotgun sequence. (432 aa)
UMAG_02072Uncharacterized protein. (459 aa)
UMAG_10071Uncharacterized protein. (216 aa)
UMAG_05127Uncharacterized protein. (466 aa)
UMAG_05151CYCLIN domain-containing protein; Belongs to the cyclin family. (493 aa)
UMAG_11783DUF1767 domain-containing protein. (451 aa)
UMAG_06296RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (491 aa)
UMAG_12168EAF domain-containing protein. (594 aa)
UMAG_01883Uncharacterized protein. (232 aa)
UMAG_01149Glyoxaloxidase 3. (652 aa)
UMAG_11302Chromatin modification-related protein. (538 aa)
UMAG_10594Protein kinase domain-containing protein. (987 aa)
UMAG_00114Chromosome 1, whole genome shotgun sequence. (457 aa)
UMAG_00183Chromosome 1, whole genome shotgun sequence. (572 aa)
UMAG_00328Chromosome 1, whole genome shotgun sequence. (951 aa)
UMAG_00586Chromosome 1, whole genome shotgun sequence. (723 aa)
UMAG_00625Chromosome 1, whole genome shotgun sequence. (997 aa)
UMAG_11828Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (442 aa)
UMAG_00669Chromosome 1, whole genome shotgun sequence. (401 aa)
UMAG_00706Chromosome 1, whole genome shotgun sequence. (1436 aa)
UMAG_11297Uncharacterized protein. (1233 aa)
UMAG_06210Uncharacterized protein. (826 aa)
UMAG_11235BHLH domain-containing protein. (364 aa)
UMAG_06249Mediator of RNA polymerase II transcription subunit 13; Component of the SRB8-11 complex. The SRB8-11 complex is a regulatory module of the Mediator complex which is itself involved in regulation of basal and activated RNA polymerase II-dependent transcription. The SRB8-11 complex may be involved in the transcriptional repression of a subset of genes regulated by Mediator. It may inhibit the association of the Mediator complex with RNA polymerase II to form the holoenzyme complex. (2199 aa)
UMAG_06037Chromosome 21, whole genome shotgun sequence. (653 aa)
UMAG_06378Chromosome 23, whole genome shotgun sequence. (689 aa)
UMAG_06387Chromosome 23, whole genome shotgun sequence. (273 aa)
UMAG_11038Putative NADH-ubiquinone oxidoreductase; Belongs to the complex I 20 kDa subunit family. (245 aa)
UMAG_06206TAF4 domain-containing protein. (452 aa)
UMAG_11227Putative transcription elongation protein. (94 aa)
UMAG_06237Uncharacterized protein. (1441 aa)
UMAG_10549Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (442 aa)
UMAG_06029Chromosome 21, whole genome shotgun sequence. (1227 aa)
UMAG_05410Chromosome 19, whole genome shotgun sequence. (598 aa)
UMAG_11192TAFII28 domain-containing protein. (460 aa)
UMAG_05827Uncharacterized protein. (1088 aa)
UMAG_11029Ribosomal_S10 domain-containing protein. (280 aa)
UMAG_10551General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (516 aa)
UMAG_10723Chromosome 16, whole genome shotgun sequence. (310 aa)
UMAG_10936Chromosome 16, whole genome shotgun sequence. (71 aa)
UMAG_04902Chromosome 15, whole genome shotgun sequence; Belongs to the protein kinase superfamily. (379 aa)
UMAG_04722RPOL4c domain-containing protein. (175 aa)
UMAG_04927Chromosome 15, whole genome shotgun sequence. (219 aa)
UMAG_12008Chromosome 15, whole genome shotgun sequence. (3700 aa)
UMAG_10843Uncharacterized protein. (549 aa)
UMAG_15022Chromosome 16, whole genome shotgun sequence. (263 aa)
UMAG_04518HECT domain-containing protein. (2313 aa)
UMAG_06358Chromosome 23, whole genome shotgun sequence. (867 aa)
UMAG_04609Uncharacterized protein. (1092 aa)
UMAG_04944Chromosome 15, whole genome shotgun sequence. (1597 aa)
UMAG_04168Chromosome 12, whole genome shotgun sequence. (936 aa)
UMAG_04317BHLH domain-containing protein. (625 aa)
UMAG_10429DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1241 aa)
UMAG_05888Uncharacterized protein. (315 aa)
UMAG_04055CID domain-containing protein. (589 aa)
UMAG_04098Chromosome 12, whole genome shotgun sequence. (202 aa)
UMAG_11575Uncharacterized protein. (247 aa)
UMAG_10662Chromosome 10, whole genome shotgun sequence. (237 aa)
UMAG_04234Chromosome 12, whole genome shotgun sequence. (568 aa)
UMAG_10349Uncharacterized protein. (601 aa)
UMAG_10359DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (133 aa)
UMAG_04269Chromosome 12, whole genome shotgun sequence. (374 aa)
UMAG_15099Uncharacterized protein. (656 aa)
UMAG_04711Uncharacterized protein. (1507 aa)
UMAG_11736RING-type domain-containing protein. (917 aa)
UMAG_03977Uncharacterized protein. (211 aa)
UMAG_05633Chromosome 16, whole genome shotgun sequence. (451 aa)
UMAG_03626Chromosome 9, whole genome shotgun sequence. (773 aa)
UMAG_10393Chromosome 8, whole genome shotgun sequence. (860 aa)
UMAG_10399Chromosome 8, whole genome shotgun sequence; Belongs to the cyclin family. (286 aa)
UMAG_03680Chromosome 10, whole genome shotgun sequence. (433 aa)
UMAG_12222Chromosome 8, whole genome shotgun sequence. (706 aa)
UMAG_10845UDG domain-containing protein. (511 aa)
UMAG_04344XPGN domain-containing protein. (699 aa)
UMAG_03520Chromosome 9, whole genome shotgun sequence. (963 aa)
UMAG_04472G-patch domain-containing protein. (414 aa)
UMAG_04610Uncharacterized protein. (703 aa)
UMAG_15003Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (756 aa)
UMAG_03274Chromosome 8, whole genome shotgun sequence. (869 aa)
UMAG_03304Chromosome 8, whole genome shotgun sequence. (207 aa)
UMAG_02530SHNi-TPR domain-containing protein. (454 aa)
UMAG_03386Chromosome 8, whole genome shotgun sequence. (374 aa)
UMAG_10433Chromosome 12, whole genome shotgun sequence. (138 aa)
UMAG_12194Uncharacterized protein. (377 aa)
UMAG_10602Uncharacterized protein. (2238 aa)
UMAG_03079Chromosome 7, whole genome shotgun sequence. (1046 aa)
UMAG_03802Chromosome 10, whole genome shotgun sequence. (701 aa)
UMAG_10512Chromosome 10, whole genome shotgun sequence. (208 aa)
UMAG_02065Histone deacetylase. (569 aa)
UMAG_02400BTP domain-containing protein. (793 aa)
UMAG_02102Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. (727 aa)
UMAG_03496Chromosome 9, whole genome shotgun sequence. (793 aa)
UMAG_03543Chromatin modification-related protein. (339 aa)
UMAG_02324RNA_pol_L_2 domain-containing protein. (145 aa)
UMAG_02420Uncharacterized protein. (588 aa)
UMAG_02478Uncharacterized protein. (790 aa)
UMAG_11881PHD-type domain-containing protein. (1182 aa)
UMAG_05183Uncharacterized protein. (214 aa)
UMAG_02881Chromosome 7, whole genome shotgun sequence. (403 aa)
UMAG_05213Uncharacterized protein. (831 aa)
UMAG_02925Chromosome 7, whole genome shotgun sequence. (769 aa)
UMAG_06294WD_REPEATS_REGION domain-containing protein. (551 aa)
UMAG_10318Chromosome 7, whole genome shotgun sequence. (351 aa)
UMAG_11947Glutaredoxin-like protein; Belongs to the glutaredoxin family. (88 aa)
UMAG_01626Uncharacterized protein. (575 aa)
UMAG_02619Uncharacterized protein. (1846 aa)
UMAG_01696Uncharacterized protein. (564 aa)
UMAG_10570Uncharacterized protein. (802 aa)
UMAG_11717HDAC_interact domain-containing protein. (1461 aa)
UMAG_11727WD_REPEATS_REGION domain-containing protein. (527 aa)
UMAG_00922Uncharacterized protein. (422 aa)
UMAG_12353Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (87 aa)
UMAG_01961Zn(2)-C6 fungal-type domain-containing protein. (894 aa)
UMAG_00981Uncharacterized protein. (1466 aa)
UMAG_01969SAGA-associated factor 11. (466 aa)
UMAG_01093Enhancer of polycomb-like protein. (1516 aa)
UMAG_00878Bromo domain-containing protein. (826 aa)
UMAG_00913Glyoxaloxidase 2. (625 aa)
UMAG_10626BHLH domain-containing protein. (399 aa)
UMAG_01307Uncharacterized protein. (419 aa)
UMAG_02411Glyoxaloxidase 1. (862 aa)
UMAG_02472RRM domain-containing protein. (638 aa)
UMAG_01104Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (256 aa)
UMAG_05089GFA domain-containing protein. (233 aa)
UMAG_10194Putative DNA-directed RNA polymerase core subunit RPB10. (71 aa)
UMAG_00226Chromosome 1, whole genome shotgun sequence. (317 aa)
UMAG_01529CBS domain-containing protein. (386 aa)
UMAG_01569ArAE_2 domain-containing protein. (1465 aa)
UMAG_00399Chromosome 1, whole genome shotgun sequence. (943 aa)
UMAG_00218Chromosome 1, whole genome shotgun sequence. (636 aa)
UMAG_00592Chromosome 1, whole genome shotgun sequence. (869 aa)
UMAG_00741Chromosome 1, whole genome shotgun sequence. (1214 aa)
UMAG_10100Chromosome 1, whole genome shotgun sequence. (215 aa)
UMAG_00903Ubiquitinyl hydrolase 1. (778 aa)
UMAG_10113Chromosome 1, whole genome shotgun sequence. (701 aa)
UMAG_00443Chromosome 1, whole genome shotgun sequence. (668 aa)
UMAG_00503Chromosome 1, whole genome shotgun sequence. (479 aa)
UMAG_11652Sld5 domain-containing protein. (303 aa)
UMAG_01200Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (738 aa)
UMAG_01338B30.2/SPRY domain-containing protein. (828 aa)
UMAG_00810Chromosome 1, whole genome shotgun sequence. (871 aa)
UMAG_12153Chromosome 1, whole genome shotgun sequence. (309 aa)
UMAG_00492Chromosome 1, whole genome shotgun sequence. (480 aa)
UMAG_00598Chromosome 1, whole genome shotgun sequence. (450 aa)
SUS1Transcription and mRNA export factor SUS1; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction and promoter selectivity, interaction with transcription activators, and chromatin modification through histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex required for deubiquitination of [...] (106 aa)
RGR1Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity). (1493 aa)
Your Current Organism:
Ustilago maydis
NCBI taxonomy Id: 237631
Other names: U. maydis 521, Ustilago maydis 521
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.