12 items (Ustilago maydis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	UMAG_10512	Chromosome 10, whole genome shotgun sequence. (208 aa)
	UMAG_03863	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1774 aa)
	UMAG_05334	Chromosome 19, whole genome shotgun sequence. (170 aa)
	UMAG_04460	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (161 aa)
	UMAG_03550	Chromosome 9, whole genome shotgun sequence. (329 aa)
	UMAG_10936	Chromosome 16, whole genome shotgun sequence. (71 aa)
	UMAG_04722	RPOL4c domain-containing protein. (175 aa)
	UMAG_10429	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1241 aa)
	UMAG_10359	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (133 aa)
	UMAG_10433	Chromosome 12, whole genome shotgun sequence. (138 aa)
	UMAG_02324	RNA_pol_L_2 domain-containing protein. (145 aa)
	UMAG_10194	Putative DNA-directed RNA polymerase core subunit RPB10. (71 aa)

Your Current Organism:

Ustilago maydis

NCBI taxonomy Id: 237631
Other names: U. maydis 521, Ustilago maydis 521

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
UMAG_02324	UMAG_03550	A0A0D1E1J3	A0A0D1CPC3	RNA_pol_L_2 domain-containing protein.	Chromosome 9, whole genome shotgun sequence.	0.999
UMAG_02324	UMAG_03863	A0A0D1E1J3	A0A0D1C3I0	RNA_pol_L_2 domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
UMAG_02324	UMAG_04460	A0A0D1E1J3	A0A0D1CKL7	RNA_pol_L_2 domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
UMAG_02324	UMAG_04722	A0A0D1E1J3	A0A0D1DS00	RNA_pol_L_2 domain-containing protein.	RPOL4c domain-containing protein.	0.999
UMAG_02324	UMAG_05334	A0A0D1E1J3	A0A0D1CH76	RNA_pol_L_2 domain-containing protein.	Chromosome 19, whole genome shotgun sequence.	0.999
UMAG_02324	UMAG_10194	A0A0D1E1J3	A0A0D1E6U2	RNA_pol_L_2 domain-containing protein.	Putative DNA-directed RNA polymerase core subunit RPB10.	0.999
UMAG_02324	UMAG_10359	A0A0D1E1J3	A0A0D1DVP0	RNA_pol_L_2 domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
UMAG_02324	UMAG_10429	A0A0D1E1J3	A0A0D1DTZ1	RNA_pol_L_2 domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
UMAG_02324	UMAG_10433	A0A0D1E1J3	A0A0D1DZ02	RNA_pol_L_2 domain-containing protein.	Chromosome 12, whole genome shotgun sequence.	0.999
UMAG_02324	UMAG_10512	A0A0D1E1J3	A0A0D1E0K8	RNA_pol_L_2 domain-containing protein.	Chromosome 10, whole genome shotgun sequence.	0.999
UMAG_02324	UMAG_10936	A0A0D1E1J3	A0A0D1DRC0	RNA_pol_L_2 domain-containing protein.	Chromosome 16, whole genome shotgun sequence.	0.999
UMAG_03550	UMAG_02324	A0A0D1CPC3	A0A0D1E1J3	Chromosome 9, whole genome shotgun sequence.	RNA_pol_L_2 domain-containing protein.	0.999
UMAG_03550	UMAG_03863	A0A0D1CPC3	A0A0D1C3I0	Chromosome 9, whole genome shotgun sequence.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
UMAG_03550	UMAG_04460	A0A0D1CPC3	A0A0D1CKL7	Chromosome 9, whole genome shotgun sequence.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
UMAG_03550	UMAG_04722	A0A0D1CPC3	A0A0D1DS00	Chromosome 9, whole genome shotgun sequence.	RPOL4c domain-containing protein.	0.999
UMAG_03550	UMAG_05334	A0A0D1CPC3	A0A0D1CH76	Chromosome 9, whole genome shotgun sequence.	Chromosome 19, whole genome shotgun sequence.	0.999
UMAG_03550	UMAG_10194	A0A0D1CPC3	A0A0D1E6U2	Chromosome 9, whole genome shotgun sequence.	Putative DNA-directed RNA polymerase core subunit RPB10.	0.999
UMAG_03550	UMAG_10359	A0A0D1CPC3	A0A0D1DVP0	Chromosome 9, whole genome shotgun sequence.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
UMAG_03550	UMAG_10429	A0A0D1CPC3	A0A0D1DTZ1	Chromosome 9, whole genome shotgun sequence.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
UMAG_03550	UMAG_10433	A0A0D1CPC3	A0A0D1DZ02	Chromosome 9, whole genome shotgun sequence.	Chromosome 12, whole genome shotgun sequence.	0.999