STRINGSTRING
UMAG_00706 UMAG_00706 UMAG_11301 UMAG_11301 UMAG_05262 UMAG_05262 UMAG_10347 UMAG_10347 UMAG_04820 UMAG_04820 UMAG_05029 UMAG_05029 UMAG_04603 UMAG_04603 UMAG_04013 UMAG_04013 UMAG_00575 UMAG_00575 UMAG_05557 UMAG_05557 UMAG_03743 UMAG_03743 UMAG_02605 UMAG_02605 UMAG_10071 UMAG_10071 UMAG_04381 UMAG_04381 UMAG_04812 UMAG_04812 UMAG_06037 UMAG_06037 UMAG_02311 UMAG_02311 INO80 INO80 SWC4 SWC4 YAF9 YAF9 RVB2 RVB2 SWC5 SWC5 SWR1 SWR1 ARP4 ARP4 RVB1 RVB1 UMAG_05207 UMAG_05207 UMAG_01027 UMAG_01027 UMAG_02462 UMAG_02462 UMAG_12116 UMAG_12116 UMAG_02607 UMAG_02607 UMAG_10645 UMAG_10645 UMAG_12243 UMAG_12243 UMAG_03288 UMAG_03288 UMAG_02958 UMAG_02958 UMAG_10833 UMAG_10833 UMAG_11545 UMAG_11545 UMAG_06410 UMAG_06410
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
UMAG_00706Chromosome 1, whole genome shotgun sequence. (1436 aa)
UMAG_11301Putative SWI/SNF catalytic subunit. (1506 aa)
UMAG_05262Chromosome 19, whole genome shotgun sequence. (1059 aa)
UMAG_10347Uncharacterized protein; Belongs to the actin family. (813 aa)
UMAG_04820Uncharacterized protein. (1009 aa)
UMAG_05029Chromosome 15, whole genome shotgun sequence; Belongs to the actin family. (544 aa)
UMAG_04603Actin-related protein 8; Probably involved in transcription regulation via its interaction with the INO80 complex, a chromatin remodeling complex. Belongs to the actin family. (918 aa)
UMAG_04013PAPA-1 domain-containing protein. (545 aa)
UMAG_00575Chromosome 1, whole genome shotgun sequence. (882 aa)
UMAG_05557Uncharacterized protein. (976 aa)
UMAG_03743Chromosome 10, whole genome shotgun sequence; Belongs to the actin family. (732 aa)
UMAG_02605PHD domain-containing protein. (1084 aa)
UMAG_10071Uncharacterized protein. (216 aa)
UMAG_04381Uncharacterized protein. (2080 aa)
UMAG_04812ARID domain-containing protein. (1652 aa)
UMAG_06037Chromosome 21, whole genome shotgun sequence. (653 aa)
UMAG_02311PHD domain-containing protein. (1100 aa)
INO80Chromatin-remodeling ATPase INO80; ATPase component of the INO80 complex which remodels chromatin by shifting nucleosomes and is involved in DNA repair. (1910 aa)
SWC4SWR1-complex protein 4; Component of the SWR1 complex which mediates the ATP- dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. The NuA4 complex is also involved in DNA repair (By similarity). (615 aa)
YAF9Protein AF-9 homolog; Component of the SWR1 complex which mediates the ATP- dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histones H4 and H2A. The NuA4 complex is also involved in DNA repair. Yaf9 may also be required for viability in conditions in which the structural integrity of the spindle is compromised (By similarity). (431 aa)
RVB2RuvB-like helicase 2; DNA helicase which participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. The SWR1 complex mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. The INO80 complex remodels chromatin by shifting nucleosomes and is involved in DNA repair. Also involved in pre-rRNA processing (By similarity); Belongs to the RuvB family. (476 aa)
SWC5SWR1-complex protein 5; Component of the SWR1 complex which mediates the ATP- dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Involved in chromosome stability (By similarity). (354 aa)
SWR1Helicase SWR1; Catalytic component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling; Belongs to the SNF2/RAD54 helicase family. SWR1 subfamily. (1830 aa)
ARP4Actin-related protein 4; Chromatin interaction component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. The NuA4 complex is also involved in DNA repair. Is required for NuA4 complex integrity. Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the INO80 complex which remodels chromatin by shifting nucleosomes [...] (534 aa)
RVB1RuvB-like helicase 1; DNA helicase which participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. The SWR1 complex mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. The INO80 complex remodels chromatin by shifting nucleosomes and is involved in DNA repair. Also involved in pre-rRNA processing (By similarity); Belongs to the RuvB family. (488 aa)
UMAG_05207CBFD_NFYB_HMF domain-containing protein. (250 aa)
UMAG_01027Uncharacterized protein. (734 aa)
UMAG_02462Zn(2)-C6 fungal-type domain-containing protein. (1561 aa)
UMAG_12116ARID domain-containing protein. (1332 aa)
UMAG_02607Putative chromatin remodeling complex ATPase subunit. (1108 aa)
UMAG_10645Chromosome 8, whole genome shotgun sequence. (1027 aa)
UMAG_12243Chromosome 10, whole genome shotgun sequence. (1081 aa)
UMAG_03288Chromosome 8, whole genome shotgun sequence. (249 aa)
UMAG_02958Chromosome 7, whole genome shotgun sequence. (846 aa)
UMAG_10833Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (1159 aa)
UMAG_11545YL1_C domain-containing protein. (199 aa)
UMAG_06410Chromosome 23, whole genome shotgun sequence. (796 aa)
Your Current Organism:
Ustilago maydis
NCBI taxonomy Id: 237631
Other names: U. maydis 521, Ustilago maydis 521
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