4 items (Ustilago maydis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	UMAG_11698	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family. (527 aa)
	UMAG_10213	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. (543 aa)
	UMAG_10397	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. (540 aa)
	UMAG_10926	Chromosome 1, whole genome shotgun sequence. (613 aa)

Your Current Organism:

Ustilago maydis

NCBI taxonomy Id: 237631
Other names: U. maydis 521, Ustilago maydis 521

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
UMAG_10213	UMAG_10397	A0A0D1DUY7	A0A0D1E227	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
UMAG_10213	UMAG_10926	A0A0D1DUY7	A0A0D1E8Q8	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Chromosome 1, whole genome shotgun sequence.	0.844
UMAG_10213	UMAG_11698	A0A0D1DUY7	A0A0D1CAX4	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.	0.909
UMAG_10397	UMAG_10213	A0A0D1E227	A0A0D1DUY7	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
UMAG_10397	UMAG_10926	A0A0D1E227	A0A0D1E8Q8	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Chromosome 1, whole genome shotgun sequence.	0.855
UMAG_10397	UMAG_11698	A0A0D1E227	A0A0D1CAX4	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.	0.890
UMAG_10926	UMAG_10213	A0A0D1E8Q8	A0A0D1DUY7	Chromosome 1, whole genome shotgun sequence.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.844
UMAG_10926	UMAG_10397	A0A0D1E8Q8	A0A0D1E227	Chromosome 1, whole genome shotgun sequence.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.855
UMAG_10926	UMAG_11698	A0A0D1E8Q8	A0A0D1CAX4	Chromosome 1, whole genome shotgun sequence.	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.	0.999
UMAG_11698	UMAG_10213	A0A0D1CAX4	A0A0D1DUY7	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.909
UMAG_11698	UMAG_10397	A0A0D1CAX4	A0A0D1E227	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.890
UMAG_11698	UMAG_10926	A0A0D1CAX4	A0A0D1E8Q8	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.	Chromosome 1, whole genome shotgun sequence.	0.999