(19 nodes) HotDog domain superfamily network (Ustilago maydis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	UMAG_11630	Chromosome 1, whole genome shotgun sequence. (167 aa)
	UMAG_12337	Chromosome 23, whole genome shotgun sequence. (492 aa)
	UMAG_06460	Chromosome 23, whole genome shotgun sequence. (3704 aa)
	UMAG_06465	Chromosome 23, whole genome shotgun sequence. (382 aa)
	UMAG_04744	Uncharacterized protein. (358 aa)
	UMAG_04666	4HBT domain-containing protein. (179 aa)
	UMAG_11366	MaoC_dehydrat_N domain-containing protein. (355 aa)
	UMAG_10456	4HBT domain-containing protein. (365 aa)
	UMAG_01428	Uncharacterized protein. (369 aa)
	UMAG_01747	Uncharacterized protein. (333 aa)
	UMAG_11164	Chromosome 1, whole genome shotgun sequence. (217 aa)
	UMAG_01415	Uncharacterized protein. (358 aa)
	UMAG_00334	Chromosome 1, whole genome shotgun sequence. (373 aa)
	UMAG_11130	Chromosome 12, whole genome shotgun sequence. (162 aa)
	UMAG_10038	Chromosome 1, whole genome shotgun sequence. (911 aa)
	UMAG_00146	Chromosome 1, whole genome shotgun sequence. (223 aa)
	UMAG_02147	Uncharacterized protein. (703 aa)
	UMAG_10339	Chromosome 7, whole genome shotgun sequence. (3892 aa)
	UMAG_03476	Chromosome 9, whole genome shotgun sequence. (393 aa)

Your Current Organism:

Ustilago maydis

NCBI taxonomy Id: 237631
Other names: U. maydis 521, Ustilago maydis 521

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
UMAG_00334	UMAG_10038	A0A0D1EC32	A0A0D1CFD2	Chromosome 1, whole genome shotgun sequence.	Chromosome 1, whole genome shotgun sequence.	0.504
UMAG_00334	UMAG_11630	A0A0D1EC32	A0A0D1EE15	Chromosome 1, whole genome shotgun sequence.	Chromosome 1, whole genome shotgun sequence.	0.405
UMAG_01415	UMAG_11630	A0A0D1EAX8	A0A0D1EE15	Uncharacterized protein.	Chromosome 1, whole genome shotgun sequence.	0.549
UMAG_02147	UMAG_10456	A0A0D1C838	A0A0D1E3Y0	Uncharacterized protein.	4HBT domain-containing protein.	0.609
UMAG_02147	UMAG_11630	A0A0D1C838	A0A0D1EE15	Uncharacterized protein.	Chromosome 1, whole genome shotgun sequence.	0.411
UMAG_04744	UMAG_11630	A0A0D1DS22	A0A0D1EE15	Uncharacterized protein.	Chromosome 1, whole genome shotgun sequence.	0.405
UMAG_06460	UMAG_10339	A0A0D1DNX1	A0A0D1C5S0	Chromosome 23, whole genome shotgun sequence.	Chromosome 7, whole genome shotgun sequence.	0.904
UMAG_10038	UMAG_00334	A0A0D1CFD2	A0A0D1EC32	Chromosome 1, whole genome shotgun sequence.	Chromosome 1, whole genome shotgun sequence.	0.504
UMAG_10339	UMAG_06460	A0A0D1C5S0	A0A0D1DNX1	Chromosome 7, whole genome shotgun sequence.	Chromosome 23, whole genome shotgun sequence.	0.904
UMAG_10456	UMAG_02147	A0A0D1E3Y0	A0A0D1C838	4HBT domain-containing protein.	Uncharacterized protein.	0.609
UMAG_10456	UMAG_12337	A0A0D1E3Y0	A0A0D1DNP2	4HBT domain-containing protein.	Chromosome 23, whole genome shotgun sequence.	0.609
UMAG_11630	UMAG_00334	A0A0D1EE15	A0A0D1EC32	Chromosome 1, whole genome shotgun sequence.	Chromosome 1, whole genome shotgun sequence.	0.405
UMAG_11630	UMAG_01415	A0A0D1EE15	A0A0D1EAX8	Chromosome 1, whole genome shotgun sequence.	Uncharacterized protein.	0.549
UMAG_11630	UMAG_02147	A0A0D1EE15	A0A0D1C838	Chromosome 1, whole genome shotgun sequence.	Uncharacterized protein.	0.411
UMAG_11630	UMAG_04744	A0A0D1EE15	A0A0D1DS22	Chromosome 1, whole genome shotgun sequence.	Uncharacterized protein.	0.405
UMAG_11630	UMAG_12337	A0A0D1EE15	A0A0D1DNP2	Chromosome 1, whole genome shotgun sequence.	Chromosome 23, whole genome shotgun sequence.	0.410
UMAG_12337	UMAG_10456	A0A0D1DNP2	A0A0D1E3Y0	Chromosome 23, whole genome shotgun sequence.	4HBT domain-containing protein.	0.609
UMAG_12337	UMAG_11630	A0A0D1DNP2	A0A0D1EE15	Chromosome 23, whole genome shotgun sequence.	Chromosome 1, whole genome shotgun sequence.	0.410