STRINGSTRING
UMAG_03584 UMAG_03584 UMAG_04069 UMAG_04069 UMAG_04460 UMAG_04460 UMAG_10858 UMAG_10858 UMAG_10751 UMAG_10751 UMAG_04151 UMAG_04151 UMAG_10166 UMAG_10166 UMAG_10194 UMAG_10194 UMAG_15080 UMAG_15080 UMAG_01133 UMAG_01133 HTB1 HTB1 TFB5 TFB5 UMAG_01371 UMAG_01371 UMAG_01363 UMAG_01363 UMAG_01083 UMAG_01083 UMAG_00922 UMAG_00922 UMAG_02628 UMAG_02628 UMAG_02440 UMAG_02440 UMAG_10512 UMAG_10512 UMAG_10433 UMAG_10433 UMAG_10431 UMAG_10431 UMAG_04902 UMAG_04902 UMAG_10936 UMAG_10936 UMAG_10551 UMAG_10551 UMAG_00669 UMAG_00669 UMAG_06296 UMAG_06296 UMAG_05151 UMAG_05151 UMAG_10143 UMAG_10143
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
UMAG_03584Chromosome 9, whole genome shotgun sequence. (520 aa)
UMAG_04069Putative TFIIH/NER complex ATPase/helicase subunit SSL2. (940 aa)
UMAG_04460DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (161 aa)
UMAG_10858DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (129 aa)
UMAG_10751BSD domain-containing protein. (679 aa)
UMAG_04151Chromosome 12, whole genome shotgun sequence. (850 aa)
UMAG_10166Putative DNA-directed RNA polymerases I and III subunit protein. (397 aa)
UMAG_10194Putative DNA-directed RNA polymerase core subunit RPB10. (71 aa)
UMAG_15080Uncharacterized protein. (612 aa)
UMAG_01133DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1289 aa)
HTB1Histone H2B; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (142 aa)
TFB5General transcription and DNA repair factor IIH subunit TFB5; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II. In NER, TFIIH acts by opening DNA around the lesion to allow the excision of the damaged oligonucleotide and its replacement by a new DNA fragment. In transcription, TFIIH has an essential role in transcription initiation. When the pre-initiation complex (PIC) has be [...] (65 aa)
UMAG_01371Uncharacterized protein. (825 aa)
UMAG_01363Uncharacterized protein. (364 aa)
UMAG_01083RRN7-type domain-containing protein. (996 aa)
UMAG_00922Uncharacterized protein. (422 aa)
UMAG_02628DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1795 aa)
UMAG_02440Ubiquitin-ribosomal 60S subunit protein L40 fusion protein. (128 aa)
UMAG_10512Chromosome 10, whole genome shotgun sequence. (208 aa)
UMAG_10433Chromosome 12, whole genome shotgun sequence. (138 aa)
UMAG_10431Chromosome 12, whole genome shotgun sequence. (760 aa)
UMAG_04902Chromosome 15, whole genome shotgun sequence; Belongs to the protein kinase superfamily. (379 aa)
UMAG_10936Chromosome 16, whole genome shotgun sequence. (71 aa)
UMAG_10551General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (516 aa)
UMAG_00669Chromosome 1, whole genome shotgun sequence. (401 aa)
UMAG_06296RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (491 aa)
UMAG_05151CYCLIN domain-containing protein; Belongs to the cyclin family. (493 aa)
UMAG_10143Putative TATA-binding protein. (239 aa)
Your Current Organism:
Ustilago maydis
NCBI taxonomy Id: 237631
Other names: U. maydis 521, Ustilago maydis 521
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