38 items (Ustilago maydis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	UMAG_06237	Uncharacterized protein. (1441 aa)
	UMAG_11227	Putative transcription elongation protein. (94 aa)
	UMAG_00669	Chromosome 1, whole genome shotgun sequence. (401 aa)
	UMAG_12168	EAF domain-containing protein. (594 aa)
	UMAG_06296	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (491 aa)
	UMAG_05151	CYCLIN domain-containing protein; Belongs to the cyclin family. (493 aa)
	UMAG_05127	Uncharacterized protein. (466 aa)
	UMAG_03061	Chromosome 7, whole genome shotgun sequence. (432 aa)
	UMAG_03550	Chromosome 9, whole genome shotgun sequence. (329 aa)
	UMAG_04069	Putative TFIIH/NER complex ATPase/helicase subunit SSL2. (940 aa)
	UMAG_04460	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (161 aa)
	UMAG_04830	Uncharacterized protein. (617 aa)
	UMAG_10751	BSD domain-containing protein. (679 aa)
	UMAG_05334	Chromosome 19, whole genome shotgun sequence. (170 aa)
	UMAG_03863	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1774 aa)
	UMAG_04151	Chromosome 12, whole genome shotgun sequence. (850 aa)
	UMAG_12284	Nuclear cap-binding protein subunit 2. (268 aa)
	SPT5	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene (By similarity). (954 aa)
	SPT6	Transcription elongation factor SPT6; Plays a role in maintenance of chromatin structure during RNA polymerase II transcription elongation thereby repressing transcription initiation from cryptic promoters. Mediates the reassembly of nucleosomes onto the promoters of at least a selected set of genes during repression; the nucleosome reassembly is essential for transcriptional repression (By similarity); Belongs to the SPT6 family. (1723 aa)
	TFB5	General transcription and DNA repair factor IIH subunit TFB5; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II. In NER, TFIIH acts by opening DNA around the lesion to allow the excision of the damaged oligonucleotide and its replacement by a new DNA fragment. In transcription, TFIIH has an essential role in transcription initiation. When the pre-initiation complex (PIC) has be [...] (65 aa)
	IWS1	Transcription factor IWS1; Transcription factor involved in RNA polymerase II transcription regulation. May function in both SPT15/TBP post- recruitment and recruitment steps of transcription (By similarity). Belongs to the IWS1 family. (415 aa)
	UMAG_00568	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (779 aa)
	UMAG_01185	TFIIS central domain-containing protein. (177 aa)
	UMAG_10194	Putative DNA-directed RNA polymerase core subunit RPB10. (71 aa)
	UMAG_00922	Uncharacterized protein. (422 aa)
	UMAG_02324	RNA_pol_L_2 domain-containing protein. (145 aa)
	UMAG_10512	Chromosome 10, whole genome shotgun sequence. (208 aa)
	UMAG_10433	Chromosome 12, whole genome shotgun sequence. (138 aa)
	UMAG_15003	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (756 aa)
	UMAG_04610	Uncharacterized protein. (703 aa)
	UMAG_10359	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (133 aa)
	UMAG_10429	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1241 aa)
	UMAG_06211	Uncharacterized protein. (1010 aa)
	UMAG_04722	RPOL4c domain-containing protein. (175 aa)
	UMAG_04902	Chromosome 15, whole genome shotgun sequence; Belongs to the protein kinase superfamily. (379 aa)
	UMAG_10936	Chromosome 16, whole genome shotgun sequence. (71 aa)
	UMAG_10551	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (516 aa)
	UMAG_05410	Chromosome 19, whole genome shotgun sequence. (598 aa)

Your Current Organism:

Ustilago maydis

NCBI taxonomy Id: 237631
Other names: U. maydis 521, Ustilago maydis 521

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
IWS1	SPT5	Q4P7X6	Q4PIC4	Transcription factor IWS1; Transcription factor involved in RNA polymerase II transcription regulation. May function in both SPT15/TBP post- recruitment and recruitment steps of transcription (By similarity). Belongs to the IWS1 family.	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene (By similarity).	0.937
IWS1	SPT6	Q4P7X6	Q4PI89	Transcription factor IWS1; Transcription factor involved in RNA polymerase II transcription regulation. May function in both SPT15/TBP post- recruitment and recruitment steps of transcription (By similarity). Belongs to the IWS1 family.	Transcription elongation factor SPT6; Plays a role in maintenance of chromatin structure during RNA polymerase II transcription elongation thereby repressing transcription initiation from cryptic promoters. Mediates the reassembly of nucleosomes onto the promoters of at least a selected set of genes during repression; the nucleosome reassembly is essential for transcriptional repression (By similarity); Belongs to the SPT6 family.	0.999
IWS1	UMAG_00568	Q4P7X6	A0A0D1ED52	Transcription factor IWS1; Transcription factor involved in RNA polymerase II transcription regulation. May function in both SPT15/TBP post- recruitment and recruitment steps of transcription (By similarity). Belongs to the IWS1 family.	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	0.829
IWS1	UMAG_01185	Q4P7X6	A0A0D1EA62	Transcription factor IWS1; Transcription factor involved in RNA polymerase II transcription regulation. May function in both SPT15/TBP post- recruitment and recruitment steps of transcription (By similarity). Belongs to the IWS1 family.	TFIIS central domain-containing protein.	0.792
IWS1	UMAG_02324	Q4P7X6	A0A0D1E1J3	Transcription factor IWS1; Transcription factor involved in RNA polymerase II transcription regulation. May function in both SPT15/TBP post- recruitment and recruitment steps of transcription (By similarity). Belongs to the IWS1 family.	RNA_pol_L_2 domain-containing protein.	0.690
IWS1	UMAG_03550	Q4P7X6	A0A0D1CPC3	Transcription factor IWS1; Transcription factor involved in RNA polymerase II transcription regulation. May function in both SPT15/TBP post- recruitment and recruitment steps of transcription (By similarity). Belongs to the IWS1 family.	Chromosome 9, whole genome shotgun sequence.	0.896
IWS1	UMAG_03863	Q4P7X6	A0A0D1C3I0	Transcription factor IWS1; Transcription factor involved in RNA polymerase II transcription regulation. May function in both SPT15/TBP post- recruitment and recruitment steps of transcription (By similarity). Belongs to the IWS1 family.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.896
IWS1	UMAG_04460	Q4P7X6	A0A0D1CKL7	Transcription factor IWS1; Transcription factor involved in RNA polymerase II transcription regulation. May function in both SPT15/TBP post- recruitment and recruitment steps of transcription (By similarity). Belongs to the IWS1 family.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.473
IWS1	UMAG_04610	Q4P7X6	A0A0D1DYB0	Transcription factor IWS1; Transcription factor involved in RNA polymerase II transcription regulation. May function in both SPT15/TBP post- recruitment and recruitment steps of transcription (By similarity). Belongs to the IWS1 family.	Uncharacterized protein.	0.491
IWS1	UMAG_04722	Q4P7X6	A0A0D1DS00	Transcription factor IWS1; Transcription factor involved in RNA polymerase II transcription regulation. May function in both SPT15/TBP post- recruitment and recruitment steps of transcription (By similarity). Belongs to the IWS1 family.	RPOL4c domain-containing protein.	0.473
IWS1	UMAG_04830	Q4P7X6	A0A0D1CIH0	Transcription factor IWS1; Transcription factor involved in RNA polymerase II transcription regulation. May function in both SPT15/TBP post- recruitment and recruitment steps of transcription (By similarity). Belongs to the IWS1 family.	Uncharacterized protein.	0.822
IWS1	UMAG_05127	Q4P7X6	A0A0D1CUD0	Transcription factor IWS1; Transcription factor involved in RNA polymerase II transcription regulation. May function in both SPT15/TBP post- recruitment and recruitment steps of transcription (By similarity). Belongs to the IWS1 family.	Uncharacterized protein.	0.565
IWS1	UMAG_05334	Q4P7X6	A0A0D1CH76	Transcription factor IWS1; Transcription factor involved in RNA polymerase II transcription regulation. May function in both SPT15/TBP post- recruitment and recruitment steps of transcription (By similarity). Belongs to the IWS1 family.	Chromosome 19, whole genome shotgun sequence.	0.485
IWS1	UMAG_05410	Q4P7X6	A0A0D1DPQ2	Transcription factor IWS1; Transcription factor involved in RNA polymerase II transcription regulation. May function in both SPT15/TBP post- recruitment and recruitment steps of transcription (By similarity). Belongs to the IWS1 family.	Chromosome 19, whole genome shotgun sequence.	0.774
IWS1	UMAG_06237	Q4P7X6	A0A0D1DP85	Transcription factor IWS1; Transcription factor involved in RNA polymerase II transcription regulation. May function in both SPT15/TBP post- recruitment and recruitment steps of transcription (By similarity). Belongs to the IWS1 family.	Uncharacterized protein.	0.858
IWS1	UMAG_10194	Q4P7X6	A0A0D1E6U2	Transcription factor IWS1; Transcription factor involved in RNA polymerase II transcription regulation. May function in both SPT15/TBP post- recruitment and recruitment steps of transcription (By similarity). Belongs to the IWS1 family.	Putative DNA-directed RNA polymerase core subunit RPB10.	0.473
IWS1	UMAG_10359	Q4P7X6	A0A0D1DVP0	Transcription factor IWS1; Transcription factor involved in RNA polymerase II transcription regulation. May function in both SPT15/TBP post- recruitment and recruitment steps of transcription (By similarity). Belongs to the IWS1 family.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.662
IWS1	UMAG_10429	Q4P7X6	A0A0D1DTZ1	Transcription factor IWS1; Transcription factor involved in RNA polymerase II transcription regulation. May function in both SPT15/TBP post- recruitment and recruitment steps of transcription (By similarity). Belongs to the IWS1 family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.862
IWS1	UMAG_10433	Q4P7X6	A0A0D1DZ02	Transcription factor IWS1; Transcription factor involved in RNA polymerase II transcription regulation. May function in both SPT15/TBP post- recruitment and recruitment steps of transcription (By similarity). Belongs to the IWS1 family.	Chromosome 12, whole genome shotgun sequence.	0.475
IWS1	UMAG_10512	Q4P7X6	A0A0D1E0K8	Transcription factor IWS1; Transcription factor involved in RNA polymerase II transcription regulation. May function in both SPT15/TBP post- recruitment and recruitment steps of transcription (By similarity). Belongs to the IWS1 family.	Chromosome 10, whole genome shotgun sequence.	0.663