28 items (Ustilago maydis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	UMAG_00491	Chromosome 1, whole genome shotgun sequence. (765 aa)
	UMAG_00808	Chromosome 1, whole genome shotgun sequence. (967 aa)
	UMAG_10785	Uncharacterized protein. (540 aa)
	UMAG_03466	Chromosome 9, whole genome shotgun sequence. (711 aa)
	UMAG_02966	Chromosome 7, whole genome shotgun sequence. (368 aa)
	UMAG_00137	Chromosome 1, whole genome shotgun sequence. (686 aa)
	UMAG_05263	Chromosome 19, whole genome shotgun sequence. (705 aa)
	UMAG_04460	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (161 aa)
	UMAG_02903	Chromosome 7, whole genome shotgun sequence. (249 aa)
	UMAG_10143	Putative TATA-binding protein. (239 aa)
	UMAG_01595	RPOL4c domain-containing protein. (275 aa)
	UMAG_00332	Chromosome 1, whole genome shotgun sequence. (1284 aa)
	UMAG_10936	Chromosome 16, whole genome shotgun sequence. (71 aa)
	UMAG_05542	Uncharacterized protein. (950 aa)
	UMAG_06156	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1400 aa)
	UMAG_04870	Uncharacterized protein. (559 aa)
	UMAG_03251	Chromosome 8, whole genome shotgun sequence. (353 aa)
	UMAG_03058	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (715 aa)
	UMAG_11550	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (109 aa)
	UMAG_10433	Chromosome 12, whole genome shotgun sequence. (138 aa)
	UMAG_10512	Chromosome 10, whole genome shotgun sequence. (208 aa)
	UMAG_02446	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1169 aa)
	UMAG_02558	Uncharacterized protein. (686 aa)
	UMAG_02059	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (207 aa)
	UMAG_10166	Putative DNA-directed RNA polymerases I and III subunit protein. (397 aa)
	UMAG_10178	Uncharacterized protein. (84 aa)
	UMAG_10194	Putative DNA-directed RNA polymerase core subunit RPB10. (71 aa)
	UMAG_00380	Chromosome 1, whole genome shotgun sequence. (447 aa)

Your Current Organism:

Ustilago maydis

NCBI taxonomy Id: 237631
Other names: U. maydis 521, Ustilago maydis 521

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
UMAG_00137	UMAG_00808	A0A0D1CFB4	A0A0D1EB25	Chromosome 1, whole genome shotgun sequence.	Chromosome 1, whole genome shotgun sequence.	0.449
UMAG_00137	UMAG_02446	A0A0D1CFB4	A0A0D1E1A2	Chromosome 1, whole genome shotgun sequence.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.506
UMAG_00137	UMAG_03466	A0A0D1CFB4	A0A0D1C3T0	Chromosome 1, whole genome shotgun sequence.	Chromosome 9, whole genome shotgun sequence.	0.941
UMAG_00137	UMAG_04460	A0A0D1CFB4	A0A0D1CKL7	Chromosome 1, whole genome shotgun sequence.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.705
UMAG_00137	UMAG_06156	A0A0D1CFB4	A0A0D1DT74	Chromosome 1, whole genome shotgun sequence.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.447
UMAG_00137	UMAG_10143	A0A0D1CFB4	A0A0D1CTQ8	Chromosome 1, whole genome shotgun sequence.	Putative TATA-binding protein.	0.802
UMAG_00137	UMAG_10166	A0A0D1CFB4	A0A0D1E6I1	Chromosome 1, whole genome shotgun sequence.	Putative DNA-directed RNA polymerases I and III subunit protein.	0.537
UMAG_00137	UMAG_10194	A0A0D1CFB4	A0A0D1E6U2	Chromosome 1, whole genome shotgun sequence.	Putative DNA-directed RNA polymerase core subunit RPB10.	0.679
UMAG_00137	UMAG_10433	A0A0D1CFB4	A0A0D1DZ02	Chromosome 1, whole genome shotgun sequence.	Chromosome 12, whole genome shotgun sequence.	0.681
UMAG_00137	UMAG_10512	A0A0D1CFB4	A0A0D1E0K8	Chromosome 1, whole genome shotgun sequence.	Chromosome 10, whole genome shotgun sequence.	0.704
UMAG_00137	UMAG_10936	A0A0D1CFB4	A0A0D1DRC0	Chromosome 1, whole genome shotgun sequence.	Chromosome 16, whole genome shotgun sequence.	0.711
UMAG_00137	UMAG_11550	A0A0D1CFB4	A0A0D1DYK5	Chromosome 1, whole genome shotgun sequence.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.513
UMAG_00332	UMAG_00491	A0A0D1D079	A0A0D1E8E7	Chromosome 1, whole genome shotgun sequence.	Chromosome 1, whole genome shotgun sequence.	0.997
UMAG_00332	UMAG_00808	A0A0D1D079	A0A0D1EB25	Chromosome 1, whole genome shotgun sequence.	Chromosome 1, whole genome shotgun sequence.	0.974
UMAG_00332	UMAG_01595	A0A0D1D079	A0A0D1CVH2	Chromosome 1, whole genome shotgun sequence.	RPOL4c domain-containing protein.	0.716
UMAG_00332	UMAG_02059	A0A0D1D079	A0A0D1E570	Chromosome 1, whole genome shotgun sequence.	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	0.747
UMAG_00332	UMAG_02446	A0A0D1D079	A0A0D1E1A2	Chromosome 1, whole genome shotgun sequence.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.774
UMAG_00332	UMAG_02558	A0A0D1D079	A0A0D1E404	Chromosome 1, whole genome shotgun sequence.	Uncharacterized protein.	0.999
UMAG_00332	UMAG_02903	A0A0D1D079	A0A0D1CQQ3	Chromosome 1, whole genome shotgun sequence.	Chromosome 7, whole genome shotgun sequence.	0.655
UMAG_00332	UMAG_02966	A0A0D1D079	A0A0D1C5R5	Chromosome 1, whole genome shotgun sequence.	Chromosome 7, whole genome shotgun sequence.	0.702