(22 nodes) Pantothenate and CoA biosynthesis network (Ustilago maydis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	UMAG_05740	Chromosome 16, whole genome shotgun sequence. (610 aa)
	UMAG_02783	Uncharacterized protein. (398 aa)
	UMAG_10139	Putative pantoate--beta-alanine ligase. (433 aa)
	UMAG_10357	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. (425 aa)
	UMAG_10681	Putative ketol-acid reductoisomerase; Belongs to the ketol-acid reductoisomerase family. (407 aa)
	UMAG_03239	Acetolactate synthase. (736 aa)
	UMAG_00740	Chromosome 1, whole genome shotgun sequence. (566 aa)
	UMAG_11241	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (521 aa)
	UMAG_05916	VPS9 domain-containing protein. (1430 aa)
	UMAG_10979	Uncharacterized protein. (775 aa)
	UMAG_11026	Lysophospholipase. (991 aa)
	UMAG_10708	Chromosome 15, whole genome shotgun sequence. (341 aa)
	UMAG_04420	3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate. (447 aa)
	UMAG_10538	Uncharacterized protein. (359 aa)
	UMAG_03523	Chromosome 9, whole genome shotgun sequence; Belongs to the aldehyde dehydrogenase family. (521 aa)
	UMAG_12289	Chromosome 15, whole genome shotgun sequence. (280 aa)
	UMAG_10596	Putative aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (512 aa)
	UMAG_02980	Chromosome 7, whole genome shotgun sequence. (597 aa)
	UMAG_02508	Aldehyde dehydrogenase (NADP(+)) ALD4; Belongs to the aldehyde dehydrogenase family. (497 aa)
	UMAG_03699	Chromosome 10, whole genome shotgun sequence. (369 aa)
	UMAG_00115	Chromosome 1, whole genome shotgun sequence. (408 aa)
	UMAG_00283	Chromosome 1, whole genome shotgun sequence. (397 aa)

Your Current Organism:

Ustilago maydis

NCBI taxonomy Id: 237631
Other names: U. maydis 521, Ustilago maydis 521

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
UMAG_00115	UMAG_02783	A0A0D1E6Y6	A0A0D1C7E1	Chromosome 1, whole genome shotgun sequence.	Uncharacterized protein.	0.921
UMAG_00115	UMAG_02980	A0A0D1E6Y6	A0A0D1DZJ4	Chromosome 1, whole genome shotgun sequence.	Chromosome 7, whole genome shotgun sequence.	0.973
UMAG_00115	UMAG_03239	A0A0D1E6Y6	A0A0D1CPX0	Chromosome 1, whole genome shotgun sequence.	Acetolactate synthase.	0.736
UMAG_00115	UMAG_04420	A0A0D1E6Y6	A0A0D1DSK3	Chromosome 1, whole genome shotgun sequence.	3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate.	0.937
UMAG_00115	UMAG_05740	A0A0D1E6Y6	A0A0D1BYQ4	Chromosome 1, whole genome shotgun sequence.	Chromosome 16, whole genome shotgun sequence.	0.973
UMAG_00115	UMAG_05916	A0A0D1E6Y6	A0A0D1DP09	Chromosome 1, whole genome shotgun sequence.	VPS9 domain-containing protein.	0.636
UMAG_00115	UMAG_10357	A0A0D1E6Y6	A0A0D1CHY0	Chromosome 1, whole genome shotgun sequence.	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	0.904
UMAG_00115	UMAG_10708	A0A0D1E6Y6	A0A0D1DS93	Chromosome 1, whole genome shotgun sequence.	Chromosome 15, whole genome shotgun sequence.	0.514
UMAG_00283	UMAG_00740	A0A0D1EBX2	A0A0D1D1R6	Chromosome 1, whole genome shotgun sequence.	Chromosome 1, whole genome shotgun sequence.	0.900
UMAG_00283	UMAG_04420	A0A0D1EBX2	A0A0D1DSK3	Chromosome 1, whole genome shotgun sequence.	3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate.	0.900
UMAG_00283	UMAG_10139	A0A0D1EBX2	A0A0D1C8V7	Chromosome 1, whole genome shotgun sequence.	Putative pantoate--beta-alanine ligase.	0.900
UMAG_00283	UMAG_10538	A0A0D1EBX2	A0A0D1DU91	Chromosome 1, whole genome shotgun sequence.	Uncharacterized protein.	0.911
UMAG_00740	UMAG_00283	A0A0D1D1R6	A0A0D1EBX2	Chromosome 1, whole genome shotgun sequence.	Chromosome 1, whole genome shotgun sequence.	0.900
UMAG_00740	UMAG_03239	A0A0D1D1R6	A0A0D1CPX0	Chromosome 1, whole genome shotgun sequence.	Acetolactate synthase.	0.551
UMAG_00740	UMAG_04420	A0A0D1D1R6	A0A0D1DSK3	Chromosome 1, whole genome shotgun sequence.	3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate.	0.946
UMAG_00740	UMAG_10139	A0A0D1D1R6	A0A0D1C8V7	Chromosome 1, whole genome shotgun sequence.	Putative pantoate--beta-alanine ligase.	0.953
UMAG_00740	UMAG_10538	A0A0D1D1R6	A0A0D1DU91	Chromosome 1, whole genome shotgun sequence.	Uncharacterized protein.	0.900
UMAG_02508	UMAG_10139	A0A0D1DZV9	A0A0D1C8V7	Aldehyde dehydrogenase (NADP(+)) ALD4; Belongs to the aldehyde dehydrogenase family.	Putative pantoate--beta-alanine ligase.	0.901
UMAG_02783	UMAG_00115	A0A0D1C7E1	A0A0D1E6Y6	Uncharacterized protein.	Chromosome 1, whole genome shotgun sequence.	0.921
UMAG_02783	UMAG_02980	A0A0D1C7E1	A0A0D1DZJ4	Uncharacterized protein.	Chromosome 7, whole genome shotgun sequence.	0.972