24 items (Ustilago maydis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	UMAG_03481	Chromosome 9, whole genome shotgun sequence. (828 aa)
	UMAG_00920	Putative DNA replication factor C subunit protein. (353 aa)
	UMAG_11196	DNA ligase. (851 aa)
	UMAG_04976	Chromosome 15, whole genome shotgun sequence. (510 aa)
	UMAG_04669	DNA_LIGASE_A3 domain-containing protein. (1068 aa)
	UMAG_03434	Replication factor C subunit 1. (950 aa)
	UMAG_03141	Chromosome 8, whole genome shotgun sequence. (828 aa)
	UMAG_11009	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1315 aa)
	UMAG_05156	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (623 aa)
	UMAG_01458	DNA polymerase. (1057 aa)
	UMAG_04623	Putative replication factor C subunit 3. (341 aa)
	UMAG_05403	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (289 aa)
	UMAG_04165	Chromosome 12, whole genome shotgun sequence. (114 aa)
	UMAG_03766	Chromosome 10, whole genome shotgun sequence. (559 aa)
	UMAG_03025	Chromosome 7, whole genome shotgun sequence; Component of the post-replicative DNA mismatch repair system (MMR). (963 aa)
	UMAG_05208	DNA_mis_repair domain-containing protein. (831 aa)
	UMAG_02579	Uncharacterized protein. (285 aa)
	UMAG_00216	Chromosome 1, whole genome shotgun sequence. (384 aa)
	UMAG_01691	Uncharacterized protein. (1176 aa)
	UMAG_01790	Uncharacterized protein. (804 aa)
	UMAG_01932	Uncharacterized protein. (971 aa)
	UMAG_00729	Chromosome 1, whole genome shotgun sequence. (343 aa)
	UMAG_00527	Chromosome 1, whole genome shotgun sequence. (170 aa)
	MSH3	DNA mismatch repair protein MSH3; Component of the post-replicative DNA mismatch repair system (MMR). Heterodimerizes with MSH2 to form MutS beta, which binds to DNA mismatches thereby initiating DNA repair. MSH3 provides substrate- binding and substrate specificity to the complex. When bound, the MutS beta heterodimer bends the DNA helix and shields approximately 20 base pairs. Acts mainly to repair insertion-deletion loops (IDLs) from 2 to 13 nucleotides in size, but can also repair base-base and single insertion-deletion mismatches that occur during replication. After mismatch bindi [...] (1154 aa)

Your Current Organism:

Ustilago maydis

NCBI taxonomy Id: 237631
Other names: U. maydis 521, Ustilago maydis 521

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MSH3	UMAG_01458	Q4P6I8	A0A0D1CV25	DNA mismatch repair protein MSH3; Component of the post-replicative DNA mismatch repair system (MMR). Heterodimerizes with MSH2 to form MutS beta, which binds to DNA mismatches thereby initiating DNA repair. MSH3 provides substrate- binding and substrate specificity to the complex. When bound, the MutS beta heterodimer bends the DNA helix and shields approximately 20 base pairs. Acts mainly to repair insertion-deletion loops (IDLs) from 2 to 13 nucleotides in size, but can also repair base-base and single insertion-deletion mismatches that occur during replication. After mismatch bindi [...]	DNA polymerase.	0.614
MSH3	UMAG_01932	Q4P6I8	A0A0D1E8Q1	DNA mismatch repair protein MSH3; Component of the post-replicative DNA mismatch repair system (MMR). Heterodimerizes with MSH2 to form MutS beta, which binds to DNA mismatches thereby initiating DNA repair. MSH3 provides substrate- binding and substrate specificity to the complex. When bound, the MutS beta heterodimer bends the DNA helix and shields approximately 20 base pairs. Acts mainly to repair insertion-deletion loops (IDLs) from 2 to 13 nucleotides in size, but can also repair base-base and single insertion-deletion mismatches that occur during replication. After mismatch bindi [...]	Uncharacterized protein.	0.914
MSH3	UMAG_03025	Q4P6I8	A0A0D1DZP4	DNA mismatch repair protein MSH3; Component of the post-replicative DNA mismatch repair system (MMR). Heterodimerizes with MSH2 to form MutS beta, which binds to DNA mismatches thereby initiating DNA repair. MSH3 provides substrate- binding and substrate specificity to the complex. When bound, the MutS beta heterodimer bends the DNA helix and shields approximately 20 base pairs. Acts mainly to repair insertion-deletion loops (IDLs) from 2 to 13 nucleotides in size, but can also repair base-base and single insertion-deletion mismatches that occur during replication. After mismatch bindi [...]	Chromosome 7, whole genome shotgun sequence; Component of the post-replicative DNA mismatch repair system (MMR).	0.998
MSH3	UMAG_03141	Q4P6I8	A0A0D1CPS3	DNA mismatch repair protein MSH3; Component of the post-replicative DNA mismatch repair system (MMR). Heterodimerizes with MSH2 to form MutS beta, which binds to DNA mismatches thereby initiating DNA repair. MSH3 provides substrate- binding and substrate specificity to the complex. When bound, the MutS beta heterodimer bends the DNA helix and shields approximately 20 base pairs. Acts mainly to repair insertion-deletion loops (IDLs) from 2 to 13 nucleotides in size, but can also repair base-base and single insertion-deletion mismatches that occur during replication. After mismatch bindi [...]	Chromosome 8, whole genome shotgun sequence.	0.767
MSH3	UMAG_03481	Q4P6I8	A0A0D1C3U8	DNA mismatch repair protein MSH3; Component of the post-replicative DNA mismatch repair system (MMR). Heterodimerizes with MSH2 to form MutS beta, which binds to DNA mismatches thereby initiating DNA repair. MSH3 provides substrate- binding and substrate specificity to the complex. When bound, the MutS beta heterodimer bends the DNA helix and shields approximately 20 base pairs. Acts mainly to repair insertion-deletion loops (IDLs) from 2 to 13 nucleotides in size, but can also repair base-base and single insertion-deletion mismatches that occur during replication. After mismatch bindi [...]	Chromosome 9, whole genome shotgun sequence.	0.884
MSH3	UMAG_05156	Q4P6I8	A0A0D1CUI6	DNA mismatch repair protein MSH3; Component of the post-replicative DNA mismatch repair system (MMR). Heterodimerizes with MSH2 to form MutS beta, which binds to DNA mismatches thereby initiating DNA repair. MSH3 provides substrate- binding and substrate specificity to the complex. When bound, the MutS beta heterodimer bends the DNA helix and shields approximately 20 base pairs. Acts mainly to repair insertion-deletion loops (IDLs) from 2 to 13 nucleotides in size, but can also repair base-base and single insertion-deletion mismatches that occur during replication. After mismatch bindi [...]	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.511
MSH3	UMAG_05208	Q4P6I8	A0A0D1E2U3	DNA mismatch repair protein MSH3; Component of the post-replicative DNA mismatch repair system (MMR). Heterodimerizes with MSH2 to form MutS beta, which binds to DNA mismatches thereby initiating DNA repair. MSH3 provides substrate- binding and substrate specificity to the complex. When bound, the MutS beta heterodimer bends the DNA helix and shields approximately 20 base pairs. Acts mainly to repair insertion-deletion loops (IDLs) from 2 to 13 nucleotides in size, but can also repair base-base and single insertion-deletion mismatches that occur during replication. After mismatch bindi [...]	DNA_mis_repair domain-containing protein.	0.954
MSH3	UMAG_05403	Q4P6I8	A0A0D1DV16	DNA mismatch repair protein MSH3; Component of the post-replicative DNA mismatch repair system (MMR). Heterodimerizes with MSH2 to form MutS beta, which binds to DNA mismatches thereby initiating DNA repair. MSH3 provides substrate- binding and substrate specificity to the complex. When bound, the MutS beta heterodimer bends the DNA helix and shields approximately 20 base pairs. Acts mainly to repair insertion-deletion loops (IDLs) from 2 to 13 nucleotides in size, but can also repair base-base and single insertion-deletion mismatches that occur during replication. After mismatch bindi [...]	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.828
MSH3	UMAG_11009	Q4P6I8	A0A0D1CQ83	DNA mismatch repair protein MSH3; Component of the post-replicative DNA mismatch repair system (MMR). Heterodimerizes with MSH2 to form MutS beta, which binds to DNA mismatches thereby initiating DNA repair. MSH3 provides substrate- binding and substrate specificity to the complex. When bound, the MutS beta heterodimer bends the DNA helix and shields approximately 20 base pairs. Acts mainly to repair insertion-deletion loops (IDLs) from 2 to 13 nucleotides in size, but can also repair base-base and single insertion-deletion mismatches that occur during replication. After mismatch bindi [...]	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.945
UMAG_00216	UMAG_00729	A0A0D1E7A3	A0A0D1EAQ0	Chromosome 1, whole genome shotgun sequence.	Chromosome 1, whole genome shotgun sequence.	0.999
UMAG_00216	UMAG_00920	A0A0D1E7A3	A0A0D1CD13	Chromosome 1, whole genome shotgun sequence.	Putative DNA replication factor C subunit protein.	0.999
UMAG_00216	UMAG_01458	A0A0D1E7A3	A0A0D1CV25	Chromosome 1, whole genome shotgun sequence.	DNA polymerase.	0.899
UMAG_00216	UMAG_01790	A0A0D1E7A3	A0A0D1E8A3	Chromosome 1, whole genome shotgun sequence.	Uncharacterized protein.	0.458
UMAG_00216	UMAG_02579	A0A0D1E7A3	A0A0D1E431	Chromosome 1, whole genome shotgun sequence.	Uncharacterized protein.	0.830
UMAG_00216	UMAG_03025	A0A0D1E7A3	A0A0D1DZP4	Chromosome 1, whole genome shotgun sequence.	Chromosome 7, whole genome shotgun sequence; Component of the post-replicative DNA mismatch repair system (MMR).	0.664
UMAG_00216	UMAG_03141	A0A0D1E7A3	A0A0D1CPS3	Chromosome 1, whole genome shotgun sequence.	Chromosome 8, whole genome shotgun sequence.	0.878
UMAG_00216	UMAG_03434	A0A0D1E7A3	A0A0D1CNV1	Chromosome 1, whole genome shotgun sequence.	Replication factor C subunit 1.	0.999
UMAG_00216	UMAG_04623	A0A0D1E7A3	A0A0D1DT93	Chromosome 1, whole genome shotgun sequence.	Putative replication factor C subunit 3.	0.999
UMAG_00216	UMAG_04669	A0A0D1E7A3	A0A0D1CLJ8	Chromosome 1, whole genome shotgun sequence.	DNA_LIGASE_A3 domain-containing protein.	0.876
UMAG_00216	UMAG_04976	A0A0D1E7A3	A0A0D1CJS2	Chromosome 1, whole genome shotgun sequence.	Chromosome 15, whole genome shotgun sequence.	0.831