Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EAQ29672.1 | EAQ30458.1 | NAP1_02830 | NAP1_06760 | COG0254 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.953 |
| EAQ29672.1 | def | NAP1_02830 | NAP1_01335 | COG0254 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | Polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.935 |
| EAQ29672.1 | efp | NAP1_02830 | NAP1_04495 | COG0254 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | 0.991 |
| EAQ29672.1 | fusA | NAP1_02830 | NAP1_07460 | COG0254 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | Translation elongation factor; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 sub [...] | 0.989 |
| EAQ29672.1 | hpf | NAP1_02830 | NAP1_13053 | COG0254 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | Ribosome-associated protein Y; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | 0.925 |
| EAQ29672.1 | infA | NAP1_02830 | NAP1_01775 | COG0254 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | Translation initiation factor 1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 0.593 |
| EAQ29672.1 | infC | NAP1_02830 | NAP1_09872 | COG0254 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | Translation initiation factor 3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 0.755 |
| EAQ29672.1 | lepA | NAP1_02830 | NAP1_06485 | COG0254 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner. | 0.447 |
| EAQ29672.1 | rplA | NAP1_02830 | NAP1_15328 | COG0254 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.995 |
| EAQ29672.1 | rplB | NAP1_02830 | NAP1_07425 | COG0254 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.970 |
| EAQ29672.1 | rplC | NAP1_02830 | NAP1_07440 | COG0254 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.991 |
| EAQ29672.1 | rplD | NAP1_02830 | NAP1_07435 | COG0254 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.979 |
| EAQ29672.1 | rplE | NAP1_02830 | NAP1_07375 | COG0254 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.978 |
| EAQ29672.1 | rplF | NAP1_02830 | NAP1_07360 | COG0254 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | 50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.974 |
| EAQ29672.1 | rplI | NAP1_02830 | NAP1_06600 | COG0254 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | 50S ribosomal protein L9; Binds to the 23S rRNA. | 0.970 |
| EAQ29672.1 | rplJ | NAP1_02830 | NAP1_11753 | COG0254 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.991 |
| EAQ29672.1 | rplK | NAP1_02830 | NAP1_15323 | COG0254 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.993 |
| EAQ29672.1 | rplL | NAP1_02830 | NAP1_11758 | COG0254 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | 50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | 0.991 |
| EAQ29672.1 | rplM | NAP1_02830 | NAP1_13168 | COG0254 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.996 |
| EAQ29672.1 | rplN | NAP1_02830 | NAP1_07390 | COG0254 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.978 |
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