(8 nodes) Ribosome network (Erythrobacter sp. NAP1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rplU	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (163 aa)
	rpmA	COG0211 Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. (89 aa)
	rpsB	COG0052 Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. (256 aa)
	rpsF	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. (137 aa)
	rplS	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. (122 aa)
	rpsP	COG0228 Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. (168 aa)
	rplQ	COG0203 Ribosomal protein L17. (140 aa)
	rpsO	Ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (89 aa)

Your Current Organism:

Erythrobacter sp. NAP1

NCBI taxonomy Id: 237727
Other names: E. sp. NAP1

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplQ	rplS	NAP1_07295	NAP1_06680	COG0203 Ribosomal protein L17.	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.998
rplQ	rplU	NAP1_07295	NAP1_02115	COG0203 Ribosomal protein L17.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.997
rplQ	rpmA	NAP1_07295	NAP1_02120	COG0203 Ribosomal protein L17.	COG0211 Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.999
rplQ	rpsB	NAP1_07295	NAP1_02755	COG0203 Ribosomal protein L17.	COG0052 Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.997
rplQ	rpsF	NAP1_07295	NAP1_06590	COG0203 Ribosomal protein L17.	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.997
rplQ	rpsO	NAP1_07295	NAP1_08892	COG0203 Ribosomal protein L17.	Ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.998
rplQ	rpsP	NAP1_07295	NAP1_06725	COG0203 Ribosomal protein L17.	COG0228 Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.998
rplS	rplQ	NAP1_06680	NAP1_07295	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	COG0203 Ribosomal protein L17.	0.998
rplS	rplU	NAP1_06680	NAP1_02115	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.998
rplS	rpmA	NAP1_06680	NAP1_02120	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	COG0211 Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.998
rplS	rpsB	NAP1_06680	NAP1_02755	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	COG0052 Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.998
rplS	rpsF	NAP1_06680	NAP1_06590	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.997
rplS	rpsO	NAP1_06680	NAP1_08892	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	Ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.997
rplS	rpsP	NAP1_06680	NAP1_06725	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	COG0228 Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.999
rplU	rplQ	NAP1_02115	NAP1_07295	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	COG0203 Ribosomal protein L17.	0.997
rplU	rplS	NAP1_02115	NAP1_06680	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.998
rplU	rpmA	NAP1_02115	NAP1_02120	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	COG0211 Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.999
rplU	rpsB	NAP1_02115	NAP1_02755	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	COG0052 Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.997
rplU	rpsF	NAP1_02115	NAP1_06590	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.997
rplU	rpsO	NAP1_02115	NAP1_08892	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	Ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.995