(11 nodes) Domain present in ubiquitin-regulatory proteins, and Spindle disassembly network (Collichthys lucidus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D9C73_000766	UBX domain-containing protein 4. (497 aa)
	D9C73_003067	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family. (590 aa)
	D9C73_003094	Transitional endoplasmic reticulum ATPase. (808 aa)
	D9C73_003155	Tether containing UBX domain for GLUT4. (615 aa)
	D9C73_006633	FAS-associated factor 2. (620 aa)
	D9C73_006352	UBX domain-containing protein 1 SAPK substrate protein 1. (304 aa)
	D9C73_007637	Small VCP/p97-interacting protein. (82 aa)
	D9C73_008668	FAS-associated factor 1. (672 aa)
	D9C73_008848	UBX domain-containing protein 6. (475 aa)
	D9C73_009928	UBX domain-containing protein 2A. (246 aa)
	D9C73_012377	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family. (806 aa)

Your Current Organism:

Collichthys lucidus

NCBI taxonomy Id: 240159
Other names: C. lucidus, Sciaena lucida, big head croaker

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D9C73_000766	D9C73_003067	A0A4U5U293	A0A4U5U498	UBX domain-containing protein 4.	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.	0.989
D9C73_000766	D9C73_003094	A0A4U5U293	A0A4U5U5B2	UBX domain-containing protein 4.	Transitional endoplasmic reticulum ATPase.	0.989
D9C73_000766	D9C73_003155	A0A4U5U293	A0A4U5U659	UBX domain-containing protein 4.	Tether containing UBX domain for GLUT4.	0.986
D9C73_000766	D9C73_006352	A0A4U5U293	A0A4U5UE24	UBX domain-containing protein 4.	UBX domain-containing protein 1 SAPK substrate protein 1.	0.906
D9C73_000766	D9C73_006633	A0A4U5U293	A0A4U5UDC7	UBX domain-containing protein 4.	FAS-associated factor 2.	0.886
D9C73_000766	D9C73_007637	A0A4U5U293	A0A4U5UHA8	UBX domain-containing protein 4.	Small VCP/p97-interacting protein.	0.847
D9C73_000766	D9C73_008668	A0A4U5U293	A0A4U5UM23	UBX domain-containing protein 4.	FAS-associated factor 1.	0.896
D9C73_000766	D9C73_008848	A0A4U5U293	A0A4U5UMJ5	UBX domain-containing protein 4.	UBX domain-containing protein 6.	0.997
D9C73_000766	D9C73_009928	A0A4U5U293	A0A4U5UNE6	UBX domain-containing protein 4.	UBX domain-containing protein 2A.	0.919
D9C73_000766	D9C73_012377	A0A4U5U293	A0A4U5UUA9	UBX domain-containing protein 4.	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.	0.989
D9C73_003067	D9C73_000766	A0A4U5U498	A0A4U5U293	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.	UBX domain-containing protein 4.	0.989
D9C73_003067	D9C73_003155	A0A4U5U498	A0A4U5U659	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.	Tether containing UBX domain for GLUT4.	0.977
D9C73_003067	D9C73_006352	A0A4U5U498	A0A4U5UE24	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.	UBX domain-containing protein 1 SAPK substrate protein 1.	0.985
D9C73_003067	D9C73_006633	A0A4U5U498	A0A4U5UDC7	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.	FAS-associated factor 2.	0.944
D9C73_003067	D9C73_007637	A0A4U5U498	A0A4U5UHA8	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.	Small VCP/p97-interacting protein.	0.930
D9C73_003067	D9C73_008668	A0A4U5U498	A0A4U5UM23	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.	FAS-associated factor 1.	0.975
D9C73_003067	D9C73_008848	A0A4U5U498	A0A4U5UMJ5	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.	UBX domain-containing protein 6.	0.989
D9C73_003067	D9C73_009928	A0A4U5U498	A0A4U5UNE6	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.	UBX domain-containing protein 2A.	0.987
D9C73_003094	D9C73_000766	A0A4U5U5B2	A0A4U5U293	Transitional endoplasmic reticulum ATPase.	UBX domain-containing protein 4.	0.989
D9C73_003094	D9C73_003155	A0A4U5U5B2	A0A4U5U659	Transitional endoplasmic reticulum ATPase.	Tether containing UBX domain for GLUT4.	0.977