(26 nodes) poly(U) RNA binding network (Collichthys lucidus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D9C73_001409	RNA-binding motif, single-stranded-interacting protein 1. (394 aa)
	D9C73_028474	Uncharacterized protein. (167 aa)
	D9C73_005653	RNA-binding protein. (334 aa)
	D9C73_005005	RNA-binding motif, single-stranded-interacting protein 2. (109 aa)
	D9C73_005037	Microspherule protein 1 58 kDa microspherule protein. (467 aa)
	D9C73_005008	RNA-binding motif, single-stranded-interacting protein 2. (169 aa)
	D9C73_006776	Synaptic functional regulator FMR1. (612 aa)
	D9C73_006775	Synaptic functional regulator FMR1. (590 aa)
	D9C73_008443	DAZ-associated protein 1. (347 aa)
	D9C73_011695	RNA-binding motif, single-stranded-interacting protein 2. (409 aa)
	D9C73_011899	Ataxin-1 Spinocerebellar ataxia type 1 protein-like protein. (580 aa)
	D9C73_011841	Embryonic polyadenylate-binding protein. (658 aa)
	D9C73_015731	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (635 aa)
	D9C73_015900	RNA-binding motif, single-stranded-interacting protein 3. (291 aa)
	D9C73_015899	RNA-binding motif, single-stranded-interacting protein 3. (99 aa)
	D9C73_016099	Ataxin-1 Spinocerebellar ataxia type 1 protein-like protein. (822 aa)
	D9C73_015891	RNA-binding motif, single-stranded-interacting protein 3. (100 aa)
	D9C73_017634	RNA-binding protein. (407 aa)
	D9C73_019519	Polyribonucleotide nucleotidyltransferase 1, mitochondrial. (770 aa)
	D9C73_020500	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (607 aa)
	D9C73_023263	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (633 aa)
	D9C73_023201	RNA-binding motif, single-stranded-interacting protein 3. (416 aa)
	D9C73_023330	Ataxin-1 Spinocerebellar ataxia type 1 protein-like protein. (813 aa)
	D9C73_001445	La autoantigen-like protein. (208 aa)
	D9C73_012029	RNA-binding protein. (213 aa)
	D9C73_005548	Ataxin-1 Spinocerebellar ataxia type 1 protein-like protein. (461 aa)

Your Current Organism:

Collichthys lucidus

NCBI taxonomy Id: 240159
Other names: C. lucidus, Sciaena lucida, big head croaker

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D9C73_005653	D9C73_011841	A0A4U5UAE7	A0A4U5UT69	RNA-binding protein.	Embryonic polyadenylate-binding protein.	0.404
D9C73_005653	D9C73_015731	A0A4U5UAE7	A0A4U5V1P3	RNA-binding protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.404
D9C73_005653	D9C73_017634	A0A4U5UAE7	A0A4U5V7W5	RNA-binding protein.	RNA-binding protein.	0.831
D9C73_005653	D9C73_020500	A0A4U5UAE7	A0A4U5VDX9	RNA-binding protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.404
D9C73_005653	D9C73_023263	A0A4U5UAE7	A0A4U5VIY4	RNA-binding protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.404
D9C73_005653	D9C73_028474	A0A4U5UAE7	A0A4U5TW43	RNA-binding protein.	Uncharacterized protein.	0.404
D9C73_008443	D9C73_011841	A0A4U5UJH6	A0A4U5UT69	DAZ-associated protein 1.	Embryonic polyadenylate-binding protein.	0.491
D9C73_008443	D9C73_015731	A0A4U5UJH6	A0A4U5V1P3	DAZ-associated protein 1.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.491
D9C73_008443	D9C73_020500	A0A4U5UJH6	A0A4U5VDX9	DAZ-associated protein 1.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.491
D9C73_008443	D9C73_023263	A0A4U5UJH6	A0A4U5VIY4	DAZ-associated protein 1.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.491
D9C73_008443	D9C73_028474	A0A4U5UJH6	A0A4U5TW43	DAZ-associated protein 1.	Uncharacterized protein.	0.491
D9C73_011841	D9C73_005653	A0A4U5UT69	A0A4U5UAE7	Embryonic polyadenylate-binding protein.	RNA-binding protein.	0.404
D9C73_011841	D9C73_008443	A0A4U5UT69	A0A4U5UJH6	Embryonic polyadenylate-binding protein.	DAZ-associated protein 1.	0.491
D9C73_011841	D9C73_012029	A0A4U5UT69	A0A4V6AQ53	Embryonic polyadenylate-binding protein.	RNA-binding protein.	0.508
D9C73_011841	D9C73_015731	A0A4U5UT69	A0A4U5V1P3	Embryonic polyadenylate-binding protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.832
D9C73_011841	D9C73_017634	A0A4U5UT69	A0A4U5V7W5	Embryonic polyadenylate-binding protein.	RNA-binding protein.	0.404
D9C73_011841	D9C73_020500	A0A4U5UT69	A0A4U5VDX9	Embryonic polyadenylate-binding protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.836
D9C73_011841	D9C73_023263	A0A4U5UT69	A0A4U5VIY4	Embryonic polyadenylate-binding protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.832
D9C73_012029	D9C73_011841	A0A4V6AQ53	A0A4U5UT69	RNA-binding protein.	Embryonic polyadenylate-binding protein.	0.508
D9C73_012029	D9C73_015731	A0A4V6AQ53	A0A4U5V1P3	RNA-binding protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.508