(18 nodes) Retrograde protein transport, ER to cytosol network (Collichthys lucidus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D9C73_028158	Minor histocompatibility antigen H13. (408 aa)
	D9C73_004433	Selenoprotein S. (190 aa)
	D9C73_006633	FAS-associated factor 2. (620 aa)
	D9C73_006615	FAS-associated factor 2. (444 aa)
	D9C73_007707	Endoplasmin. (775 aa)
	D9C73_009832	Protein sel-1-like protein 1. (796 aa)
	D9C73_012377	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family. (806 aa)
	D9C73_014752	Rhomboid-related protein 4. (326 aa)
	D9C73_015833	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family. (257 aa)
	D9C73_016124	Protein transport protein. (337 aa)
	D9C73_013027	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family. (232 aa)
	D9C73_012842	Ubiquitin recognition factor in ER-associated degradation protein 1. (314 aa)
	D9C73_010566	Minor histocompatibility antigen H13. (357 aa)
	D9C73_003067	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family. (590 aa)
	D9C73_004469	Selenoprotein S. (189 aa)
	D9C73_003094	Transitional endoplasmic reticulum ATPase. (808 aa)
	D9C73_009814	Protein sel-1-like protein 1. (817 aa)
	D9C73_013020	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family. (232 aa)

Your Current Organism:

Collichthys lucidus

NCBI taxonomy Id: 240159
Other names: C. lucidus, Sciaena lucida, big head croaker

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D9C73_003067	D9C73_004433	A0A4U5U498	A0A4U5UB52	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.	Selenoprotein S.	0.904
D9C73_003067	D9C73_004469	A0A4U5U498	A0A4U5U940	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.	Selenoprotein S.	0.904
D9C73_003067	D9C73_006615	A0A4U5U498	A0A4U5UDM4	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.	FAS-associated factor 2.	0.944
D9C73_003067	D9C73_006633	A0A4U5U498	A0A4U5UDC7	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.	FAS-associated factor 2.	0.944
D9C73_003067	D9C73_007707	A0A4U5U498	A0A4U5UG49	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.	Endoplasmin.	0.604
D9C73_003067	D9C73_009814	A0A4U5U498	A0A4U5UR20	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.	Protein sel-1-like protein 1.	0.880
D9C73_003067	D9C73_009832	A0A4U5U498	A0A4U5UM82	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.	Protein sel-1-like protein 1.	0.880
D9C73_003067	D9C73_012842	A0A4U5U498	A0A4V6APX3	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.	Ubiquitin recognition factor in ER-associated degradation protein 1.	0.980
D9C73_003067	D9C73_013020	A0A4U5U498	A0A4U5USN8	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.910
D9C73_003067	D9C73_013027	A0A4U5U498	A0A4U5USP1	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.910
D9C73_003067	D9C73_014752	A0A4U5U498	A0A4U5V0M9	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.	Rhomboid-related protein 4.	0.877
D9C73_003067	D9C73_015833	A0A4U5U498	A0A4U5V1V5	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.975
D9C73_003094	D9C73_004433	A0A4U5U5B2	A0A4U5UB52	Transitional endoplasmic reticulum ATPase.	Selenoprotein S.	0.904
D9C73_003094	D9C73_004469	A0A4U5U5B2	A0A4U5U940	Transitional endoplasmic reticulum ATPase.	Selenoprotein S.	0.904
D9C73_003094	D9C73_006615	A0A4U5U5B2	A0A4U5UDM4	Transitional endoplasmic reticulum ATPase.	FAS-associated factor 2.	0.944
D9C73_003094	D9C73_006633	A0A4U5U5B2	A0A4U5UDC7	Transitional endoplasmic reticulum ATPase.	FAS-associated factor 2.	0.944
D9C73_003094	D9C73_007707	A0A4U5U5B2	A0A4U5UG49	Transitional endoplasmic reticulum ATPase.	Endoplasmin.	0.604
D9C73_003094	D9C73_009814	A0A4U5U5B2	A0A4U5UR20	Transitional endoplasmic reticulum ATPase.	Protein sel-1-like protein 1.	0.880
D9C73_003094	D9C73_009832	A0A4U5U5B2	A0A4U5UM82	Transitional endoplasmic reticulum ATPase.	Protein sel-1-like protein 1.	0.880
D9C73_003094	D9C73_012842	A0A4U5U5B2	A0A4V6APX3	Transitional endoplasmic reticulum ATPase.	Ubiquitin recognition factor in ER-associated degradation protein 1.	0.980