(15 nodes) cytochrome-b5 reductase activity, acting on NAD(P)H, and De novo UMP biosynthetic process network (Coprinopsis cinerea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CC1G_03682	NADH-cytochrome b5 reductase; Belongs to the flavoprotein pyridine nucleotide cytochrome reductase family. (361 aa)
	CC1G_03745	Dihydroorotate oxidase. (271 aa)
	CC1G_00576	Cytochrome-b5 reductase. (324 aa)
	CC1G_07357	Uncharacterized protein. (290 aa)
	CC1G_07360	Uncharacterized protein. (445 aa)
	CC1G_00927	Dihydroorotate dehydrogenase (quinone), mitochondrial; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. (499 aa)
	CC1G_12649	Uncharacterized protein. (212 aa)
	CC1G_10835	Amidohydrolase. (1139 aa)
	CC1G_00036	Dihydroorotase. (351 aa)
	CC1G_00037	NADH-cytochrome b5 reductase. (319 aa)
	CC1G_00082	Uncharacterized protein. (360 aa)
	CC1G_00195	Uncharacterized protein. (632 aa)
	CC1G_08167	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family. (133 aa)
	CC1G_05488	Orotate phosphoribosyltransferase. (227 aa)
	CC1G_10653	Purine permease. (594 aa)

Your Current Organism:

Coprinopsis cinerea

NCBI taxonomy Id: 240176
Other names: C. cinerea okayama7#130, Coprinopsis cinerea okayama7#130, Coprinus cinereus okayama7#130

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CC1G_00036	CC1G_00037	A8NWI4	A8NWI5	Dihydroorotase.	NADH-cytochrome b5 reductase.	0.401
CC1G_00036	CC1G_00082	A8NWI4	A8NWP1	Dihydroorotase.	Uncharacterized protein.	0.401
CC1G_00036	CC1G_00195	A8NWI4	A8NX39	Dihydroorotase.	Uncharacterized protein.	0.401
CC1G_00036	CC1G_00576	A8NWI4	A8N3W4	Dihydroorotase.	Cytochrome-b5 reductase.	0.401
CC1G_00036	CC1G_00927	A8NWI4	A8N952	Dihydroorotase.	Dihydroorotate dehydrogenase (quinone), mitochondrial; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.	0.993
CC1G_00036	CC1G_03682	A8NWI4	A8N1Y9	Dihydroorotase.	NADH-cytochrome b5 reductase; Belongs to the flavoprotein pyridine nucleotide cytochrome reductase family.	0.401
CC1G_00036	CC1G_03745	A8NWI4	A8N278	Dihydroorotase.	Dihydroorotate oxidase.	0.995
CC1G_00036	CC1G_05488	A8NWI4	A8P5G1	Dihydroorotase.	Orotate phosphoribosyltransferase.	0.705
CC1G_00036	CC1G_07357	A8NWI4	A8N6I6	Dihydroorotase.	Uncharacterized protein.	0.419
CC1G_00036	CC1G_07360	A8NWI4	A8N6I9	Dihydroorotase.	Uncharacterized protein.	0.419
CC1G_00036	CC1G_10835	A8NWI4	A8NHI7	Dihydroorotase.	Amidohydrolase.	0.740
CC1G_00036	CC1G_12649	A8NWI4	A8NE33	Dihydroorotase.	Uncharacterized protein.	0.401
CC1G_00037	CC1G_00036	A8NWI5	A8NWI4	NADH-cytochrome b5 reductase.	Dihydroorotase.	0.401
CC1G_00037	CC1G_00576	A8NWI5	A8N3W4	NADH-cytochrome b5 reductase.	Cytochrome-b5 reductase.	0.900
CC1G_00037	CC1G_00927	A8NWI5	A8N952	NADH-cytochrome b5 reductase.	Dihydroorotate dehydrogenase (quinone), mitochondrial; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.	0.809
CC1G_00037	CC1G_03682	A8NWI5	A8N1Y9	NADH-cytochrome b5 reductase.	NADH-cytochrome b5 reductase; Belongs to the flavoprotein pyridine nucleotide cytochrome reductase family.	0.900
CC1G_00037	CC1G_03745	A8NWI5	A8N278	NADH-cytochrome b5 reductase.	Dihydroorotate oxidase.	0.809
CC1G_00037	CC1G_05488	A8NWI5	A8P5G1	NADH-cytochrome b5 reductase.	Orotate phosphoribosyltransferase.	0.678
CC1G_00037	CC1G_07357	A8NWI5	A8N6I6	NADH-cytochrome b5 reductase.	Uncharacterized protein.	0.472
CC1G_00037	CC1G_07360	A8NWI5	A8N6I9	NADH-cytochrome b5 reductase.	Uncharacterized protein.	0.472