7 items (Coprinopsis cinerea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CC1G_02411	NACHT domain-containing protein. (1329 aa)
	CC1G_02412	NACHT domain-containing protein. (1256 aa)
	CC1G_02435	Uncharacterized protein. (1281 aa)
	CC1G_01082	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. (483 aa)
	CC1G_09419	Uncharacterized protein. (1349 aa)
	CC1G_09250	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). (266 aa)
	CC1G_13817	NACHT domain-containing protein. (1708 aa)

Your Current Organism:

Coprinopsis cinerea

NCBI taxonomy Id: 240176
Other names: C. cinerea okayama7#130, Coprinopsis cinerea okayama7#130, Coprinus cinereus okayama7#130

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CC1G_01082	CC1G_02411	A8NEG5	A8NBF1	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	NACHT domain-containing protein.	0.900
CC1G_01082	CC1G_02412	A8NEG5	A8NBF2	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	NACHT domain-containing protein.	0.900
CC1G_01082	CC1G_02435	A8NEG5	A8NBH5	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein.	0.868
CC1G_01082	CC1G_09250	A8NEG5	A8P545	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	0.732
CC1G_01082	CC1G_09419	A8NEG5	A8NII8	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein.	0.868
CC1G_01082	CC1G_13817	A8NEG5	D6RKE2	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	NACHT domain-containing protein.	0.995
CC1G_02411	CC1G_01082	A8NBF1	A8NEG5	NACHT domain-containing protein.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.900
CC1G_02412	CC1G_01082	A8NBF2	A8NEG5	NACHT domain-containing protein.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.900
CC1G_02435	CC1G_01082	A8NBH5	A8NEG5	Uncharacterized protein.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.868
CC1G_09250	CC1G_01082	A8P545	A8NEG5	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.732
CC1G_09419	CC1G_01082	A8NII8	A8NEG5	Uncharacterized protein.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.868
CC1G_13817	CC1G_01082	D6RKE2	A8NEG5	NACHT domain-containing protein.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.995