(76 nodes) Domain of unknown function DUF6533 network (Coprinopsis cinerea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CC1G_14531	Uncharacterized protein. (533 aa)
	CC1G_14729	Uncharacterized protein. (309 aa)
	CC1G_14341	Uncharacterized protein. (81 aa)
	CC1G_14271	Uncharacterized protein. (309 aa)
	CC1G_14136	Uncharacterized protein. (339 aa)
	CC1G_13827	Uncharacterized protein. (321 aa)
	CC1G_13819	Uncharacterized protein. (317 aa)
	CC1G_11383	Uncharacterized protein. (95 aa)
	CC1G_10207	Uncharacterized protein. (319 aa)
	CC1G_04827	Uncharacterized protein. (281 aa)
	CC1G_04927	Uncharacterized protein. (396 aa)
	CC1G_04921	Uncharacterized protein. (412 aa)
	CC1G_04916	Uncharacterized protein. (504 aa)
	CC1G_10435	Uncharacterized protein. (343 aa)
	CC1G_02696	Uncharacterized protein. (320 aa)
	CC1G_02586	Uncharacterized protein. (362 aa)
	CC1G_10414	Uncharacterized protein. (272 aa)
	CC1G_06160	Uncharacterized protein. (164 aa)
	CC1G_06157	Uncharacterized protein. (217 aa)
	CC1G_09574	Uncharacterized protein. (318 aa)
	CC1G_11371	Uncharacterized protein. (301 aa)
	CC1G_11369	Uncharacterized protein. (304 aa)
	CC1G_08903	Uncharacterized protein. (296 aa)
	CC1G_08902	Uncharacterized protein. (159 aa)
	CC1G_08893	Uncharacterized protein. (345 aa)
	CC1G_08886	Uncharacterized protein. (349 aa)
	CC1G_06648	Uncharacterized protein. (233 aa)
	CC1G_12247	Uncharacterized protein. (166 aa)
	CC1G_11004	Uncharacterized protein. (98 aa)
	CC1G_10993	Uncharacterized protein. (334 aa)
	CC1G_10991	Uncharacterized protein. (259 aa)
	CC1G_10990	Uncharacterized protein. (283 aa)
	CC1G_03187	Uncharacterized protein. (317 aa)
	CC1G_02803	Uncharacterized protein. (337 aa)
	CC1G_01874	Uncharacterized protein. (416 aa)
	CC1G_12635	Uncharacterized protein. (314 aa)
	CC1G_03221	Uncharacterized protein. (299 aa)
	CC1G_02266	Uncharacterized protein. (247 aa)
	CC1G_02267	Uncharacterized protein. (332 aa)
	CC1G_02268	Uncharacterized protein. (326 aa)
	CC1G_02361	Uncharacterized protein. (308 aa)
	CC1G_02365	Uncharacterized protein. (278 aa)
	CC1G_09276	Uncharacterized protein. (295 aa)
	CC1G_09277	Uncharacterized protein. (254 aa)
	CC1G_09281	Uncharacterized protein. (331 aa)
	CC1G_09284	Uncharacterized protein. (294 aa)
	CC1G_00767	Uncharacterized protein. (319 aa)
	CC1G_12224	Uncharacterized protein. (307 aa)
	CC1G_08432	Uncharacterized protein. (450 aa)
	CC1G_03489	Uncharacterized protein. (364 aa)
	CC1G_10677	Uncharacterized protein. (372 aa)
	CC1G_05092	Uncharacterized protein. (356 aa)
	CC1G_06502	Uncharacterized protein. (302 aa)
	CC1G_07765	Uncharacterized protein. (411 aa)
	CC1G_05330	Uncharacterized protein. (263 aa)
	CC1G_03028	Uncharacterized protein. (335 aa)
	CC1G_06296	Uncharacterized protein. (340 aa)
	CC1G_07616	Uncharacterized protein. (244 aa)
	CC1G_06202	Uncharacterized protein. (308 aa)
	CC1G_06210	Uncharacterized protein. (231 aa)
	CC1G_08124	Uncharacterized protein. (588 aa)
	CC1G_05621	Uncharacterized protein. (358 aa)
	CC1G_05645	Uncharacterized protein. (524 aa)
	CC1G_07931	Uncharacterized protein. (100 aa)
	CC1G_12998	Uncharacterized protein. (337 aa)
	CC1G_12146	Uncharacterized protein. (314 aa)
	CC1G_12147	Uncharacterized protein. (313 aa)
	CC1G_10989	Uncharacterized protein. (311 aa)
	CC1G_15454	Uncharacterized protein. (324 aa)
	CC1G_15667	Uncharacterized protein. (70 aa)
	CC1G_15654	Uncharacterized protein. (152 aa)
	CC1G_15140	Uncharacterized protein. (116 aa)
	CC1G_15046	Uncharacterized protein. (419 aa)
	CC1G_15099	Uncharacterized protein. (393 aa)
	CC1G_14918	Uncharacterized protein. (238 aa)
	CC1G_14889	Uncharacterized protein. (307 aa)

Your Current Organism:

Coprinopsis cinerea

NCBI taxonomy Id: 240176
Other names: C. cinerea okayama7#130, Coprinopsis cinerea okayama7#130, Coprinus cinereus okayama7#130

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CC1G_02696	CC1G_09277	A8PBP2	A8N856	Uncharacterized protein.	Uncharacterized protein.	0.465
CC1G_02803	CC1G_08902	A8N034	A8P895	Uncharacterized protein.	Uncharacterized protein.	0.445
CC1G_02803	CC1G_09277	A8N034	A8N856	Uncharacterized protein.	Uncharacterized protein.	0.416
CC1G_03028	CC1G_05330	A8NS52	A8NPP5	Uncharacterized protein.	Uncharacterized protein.	0.436
CC1G_03028	CC1G_08902	A8NS52	A8P895	Uncharacterized protein.	Uncharacterized protein.	0.422
CC1G_03028	CC1G_09277	A8NS52	A8N856	Uncharacterized protein.	Uncharacterized protein.	0.511
CC1G_03221	CC1G_09277	A8N778	A8N856	Uncharacterized protein.	Uncharacterized protein.	0.470
CC1G_03221	CC1G_09284	A8N778	A8N863	Uncharacterized protein.	Uncharacterized protein.	0.418
CC1G_03489	CC1G_12635	A8NCD1	A8N734	Uncharacterized protein.	Uncharacterized protein.	0.404
CC1G_04927	CC1G_14341	A8PFK5	D6RLX7	Uncharacterized protein.	Uncharacterized protein.	0.457
CC1G_05330	CC1G_03028	A8NPP5	A8NS52	Uncharacterized protein.	Uncharacterized protein.	0.436
CC1G_05330	CC1G_06202	A8NPP5	A8NV72	Uncharacterized protein.	Uncharacterized protein.	0.434
CC1G_05330	CC1G_06210	A8NPP5	A8NV84	Uncharacterized protein.	Uncharacterized protein.	0.400
CC1G_05330	CC1G_12146	A8NPP5	A8P6Z0	Uncharacterized protein.	Uncharacterized protein.	0.402
CC1G_05330	CC1G_12224	A8NPP5	A8NA48	Uncharacterized protein.	Uncharacterized protein.	0.442
CC1G_05330	CC1G_12635	A8NPP5	A8N734	Uncharacterized protein.	Uncharacterized protein.	0.436
CC1G_06157	CC1G_08893	A8PAD3	A8P876	Uncharacterized protein.	Uncharacterized protein.	0.437
CC1G_06157	CC1G_09284	A8PAD3	A8N863	Uncharacterized protein.	Uncharacterized protein.	0.423
CC1G_06202	CC1G_05330	A8NV72	A8NPP5	Uncharacterized protein.	Uncharacterized protein.	0.434
CC1G_06202	CC1G_09277	A8NV72	A8N856	Uncharacterized protein.	Uncharacterized protein.	0.475