29 items (Coprinopsis cinerea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CC1G_02872	Vacuolar membrane protein. (1329 aa)
	CC1G_14378	Uncharacterized protein. (893 aa)
	CC1G_13723	Uncharacterized protein. (367 aa)
	CC1G_06089	V-type proton ATPase subunit a; Essential component of the vacuolar proton pump (V-ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes. Required for assembly and activity of the V-ATPase. (848 aa)
	CC1G_11320	Uncharacterized protein. (885 aa)
	CC1G_06967	WD_REPEATS_REGION domain-containing protein. (310 aa)
	CC1G_08668	WD_REPEATS_REGION domain-containing protein. (1272 aa)
	CC1G_05193	Endodeoxyribonuclease. (616 aa)
	CC1G_05172	MSTP042. (415 aa)
	CC1G_01190	Nitrogen permease regulator Npr2. (681 aa)
	CC1G_01176	Vacuolar ATP synthase subunit D. (273 aa)
	CC1G_01136	Rraga protein. (306 aa)
	CC1G_10082	Vacuolar membrane-associated protein IML1. (1669 aa)
	CC1G_11571	V-type proton ATPase subunit G; Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. (121 aa)
	CC1G_00894	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family. (2380 aa)
	CC1G_02354	Uncharacterized protein. (1067 aa)
	CC1G_03231	Vacuolar ATP synthase proteolipid subunit; Belongs to the V-ATPase proteolipid subunit family. (219 aa)
	CC1G_12764	Uncharacterized protein. (574 aa)
	CC1G_00662	Mip1. (1549 aa)
	CC1G_08653	V-type proton ATPase subunit C; Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit C is necessary for the assembly of the catalytic sector of the enzyme and is likely to have a specific function in its catalytic activity. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. (414 aa)
	CC1G_03431	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. (161 aa)
	CC1G_02990	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. (160 aa)
	CC1G_03017	V-type proton ATPase subunit; Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. The active enzyme consists of a catalytic V1 domain attached to an integral membrane V0 proton pore complex. This subunit is a non-integral membrane component of the membrane pore domain and is required for proper assembly of the V0 sector. Might be involved in the regulated assembly of V1 subunits onto the membrane sector or alternatively may prevent the passage of protons through V0 pores; Belongs to the V-ATPase V0D/AC39 subunit family. (357 aa)
	CC1G_12318	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family. (523 aa)
	CC1G_06331	Uncharacterized protein. (70 aa)
	CC1G_07063	Gtr1/RagA G protein Gtr2. (390 aa)
	CC1G_06453	Vacuolar H+ ATPase E1. (227 aa)
	CC1G_00269	Rheb small monomeric GTPase RhbA. (194 aa)
	CC1G_04394	V-type proton ATPase subunit F; Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. (120 aa)

Your Current Organism:

Coprinopsis cinerea

NCBI taxonomy Id: 240176
Other names: C. cinerea okayama7#130, Coprinopsis cinerea okayama7#130, Coprinus cinereus okayama7#130

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CC1G_00269	CC1G_00662	A8NXD0	A8N3F8	Rheb small monomeric GTPase RhbA.	Mip1.	0.970
CC1G_00269	CC1G_00894	A8NXD0	A8N919	Rheb small monomeric GTPase RhbA.	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.	0.991
CC1G_00269	CC1G_01136	A8NXD0	A8NEM5	Rheb small monomeric GTPase RhbA.	Rraga protein.	0.896
CC1G_00269	CC1G_01190	A8NXD0	A8NEU2	Rheb small monomeric GTPase RhbA.	Nitrogen permease regulator Npr2.	0.749
CC1G_00269	CC1G_02354	A8NXD0	A8N7U7	Rheb small monomeric GTPase RhbA.	Uncharacterized protein.	0.605
CC1G_00269	CC1G_02872	A8NXD0	A8N0A3	Rheb small monomeric GTPase RhbA.	Vacuolar membrane protein.	0.680
CC1G_00269	CC1G_03017	A8NXD0	A8NS37	Rheb small monomeric GTPase RhbA.	V-type proton ATPase subunit; Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. The active enzyme consists of a catalytic V1 domain attached to an integral membrane V0 proton pore complex. This subunit is a non-integral membrane component of the membrane pore domain and is required for proper assembly of the V0 sector. Might be involved in the regulated assembly of V1 subunits onto the membrane sector or alternatively may prevent the passage of protons through V0 pores; Belongs to the V-ATPase V0D/AC39 subunit family.	0.770
CC1G_00269	CC1G_03231	A8NXD0	A8N788	Rheb small monomeric GTPase RhbA.	Vacuolar ATP synthase proteolipid subunit; Belongs to the V-ATPase proteolipid subunit family.	0.745
CC1G_00269	CC1G_03431	A8NXD0	A8NQP9	Rheb small monomeric GTPase RhbA.	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.636
CC1G_00269	CC1G_05172	A8NXD0	A8NG45	Rheb small monomeric GTPase RhbA.	MSTP042.	0.772
CC1G_00269	CC1G_05193	A8NXD0	A8NG68	Rheb small monomeric GTPase RhbA.	Endodeoxyribonuclease.	0.757
CC1G_00269	CC1G_06089	A8NXD0	A8PA43	Rheb small monomeric GTPase RhbA.	V-type proton ATPase subunit a; Essential component of the vacuolar proton pump (V-ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes. Required for assembly and activity of the V-ATPase.	0.696
CC1G_00269	CC1G_06453	A8NXD0	A8NN56	Rheb small monomeric GTPase RhbA.	Vacuolar H+ ATPase E1.	0.773
CC1G_00269	CC1G_06967	A8NXD0	A8NZV8	Rheb small monomeric GTPase RhbA.	WD_REPEATS_REGION domain-containing protein.	0.945
CC1G_00269	CC1G_07063	A8NXD0	A8NUB1	Rheb small monomeric GTPase RhbA.	Gtr1/RagA G protein Gtr2.	0.895
CC1G_00269	CC1G_08653	A8NXD0	A8N0V6	Rheb small monomeric GTPase RhbA.	V-type proton ATPase subunit C; Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit C is necessary for the assembly of the catalytic sector of the enzyme and is likely to have a specific function in its catalytic activity. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.751
CC1G_00269	CC1G_08668	A8NXD0	A8NZD7	Rheb small monomeric GTPase RhbA.	WD_REPEATS_REGION domain-containing protein.	0.683
CC1G_00269	CC1G_10082	A8NXD0	A8NDU2	Rheb small monomeric GTPase RhbA.	Vacuolar membrane-associated protein IML1.	0.636
CC1G_00269	CC1G_11320	A8NXD0	A8P5Q0	Rheb small monomeric GTPase RhbA.	Uncharacterized protein.	0.636
CC1G_00269	CC1G_11571	A8NXD0	A8N9R8	Rheb small monomeric GTPase RhbA.	V-type proton ATPase subunit G; Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.762