STRINGSTRING
Ava_2852 Ava_2852 Ava_2858 Ava_2858 Ava_2859 Ava_2859 macB macB Ava_2861 Ava_2861 Ava_2862 Ava_2862
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Ava_2852ABC transporter-like protein. (252 aa)
Ava_2858Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (517 aa)
Ava_2859Protein of unknown function DUF214. (423 aa)
macBABC transporter-like protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides. (224 aa)
Ava_2861Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (489 aa)
Ava_2862Protein of unknown function DUF214. (405 aa)
Your Current Organism:
Trichormus variabilis
NCBI taxonomy Id: 240292
Other names: Anabaena flos-aquae A-37, Anabaena flos-aquae UTCC 67, Anabaena sp. CCALA 007, Anabaena sp. PCC 7937, Anabaena variabilis ATCC 29413, Anabaena variabilis IAM M-204, Anabaena variabilis NIES-2095, Anabaena variabilis UTCC 105, Nostoc sp. PCC 7937, T. variabilis ATCC 29413, Trichormus variabilis ATCC 29413
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