STRINGSTRING
Ava_0386 Ava_0386 Ava_0555 Ava_0555 psb27 psb27 psb28 psb28 Ava_0834 Ava_0834 Ava_1269 Ava_1269 Ava_1748 Ava_1748 Ava_1856 Ava_1856 Ava_1879 Ava_1879 Ava_2081 Ava_2081 Ava_2159 Ava_2159 Ava_3434 Ava_3434 Ava_3724 Ava_3724 Ava_4315 Ava_4315 thf1 thf1 Ava_4650 Ava_4650 Ava_4852 Ava_4852 Ava_4913 Ava_4913
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Ava_0386Conserved hypothetical protein. (102 aa)
Ava_0555Conserved hypothetical protein. (173 aa)
psb27Photosystem II 11 kD protein; Plays a role in the repair and/or biogenesis of the calcium- manganese-oxide cluster on the lumenal face of the thylakoid membrane. Its presence in a photosystem II (PSII) preparation prevents binding of some small extrinsic subunits and thus assembly of calcium-manganese- oxide cluster. (159 aa)
psb28Photosystem II protein PsbW, class I; Belongs to the Psb28 family. (111 aa)
Ava_0834Photosystem II oxygen evolving complex protein PsbP. (199 aa)
Ava_1269PAP fibrillin. (194 aa)
Ava_1748NnrU. (238 aa)
Ava_1856Glycosyl hydrolase, BNR repeat protein; Unknown. The ortholog in A.thaliana is involved in photosystem II (PSII) assembly, but knockout of the corresponding gene in Synechoccus PCC 7002 has no effect on PSII activity. (339 aa)
Ava_1879Conserved hypothetical protein. (215 aa)
Ava_2081Conserved hypothetical protein. (105 aa)
Ava_2159Protein of unknown function DUF1092. (286 aa)
Ava_3434Conserved hypothetical protein. (127 aa)
Ava_3724Protein of unknown function DUF1350. (255 aa)
Ava_4315Conserved hypothetical protein. (156 aa)
thf1Conserved hypothetical protein; May be involved in photosynthetic membrane biogenesis. (233 aa)
Ava_4650Conserved hypothetical protein. (156 aa)
Ava_4852Conserved hypothetical protein. (245 aa)
Ava_4913Conserved hypothetical protein. (208 aa)
Your Current Organism:
Trichormus variabilis
NCBI taxonomy Id: 240292
Other names: Anabaena flos-aquae A-37, Anabaena flos-aquae UTCC 67, Anabaena sp. CCALA 007, Anabaena sp. PCC 7937, Anabaena variabilis ATCC 29413, Anabaena variabilis IAM M-204, Anabaena variabilis NIES-2095, Anabaena variabilis UTCC 105, Nostoc sp. PCC 7937, T. variabilis ATCC 29413, Trichormus variabilis ATCC 29413
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