STRINGSTRING
Ava_0523 Ava_0523 Ava_0569 Ava_0569 Ava_0936 Ava_0936 Ava_1080 Ava_1080 mdh mdh Ava_1783 Ava_1783 Ava_1784 Ava_1784 Ava_2713 Ava_2713 Ava_2844 Ava_2844 nifJ nifJ Ava_3648 Ava_3648 fdxB fdxB Ava_4831 Ava_4831
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Ava_0523Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (330 aa)
Ava_0569Aconitase; Belongs to the aconitase/IPM isomerase family. (876 aa)
Ava_0936Succinate dehydrogenase subunit A. (578 aa)
Ava_1080Ferredoxin (flavodoxin) oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin. (1190 aa)
mdhMalate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family. (324 aa)
Ava_1783succinyl-CoA synthetase (ADP-forming) beta subunit. (408 aa)
Ava_1784succinyl-CoA synthetase (ADP-forming) alpha subunit. (293 aa)
Ava_2713Citrate synthase; Belongs to the citrate synthase family. (378 aa)
Ava_2844Conserved hypothetical protein. (692 aa)
nifJFerredoxin (flavodoxin) oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. (1190 aa)
Ava_3648Succinate dehydrogenase subunit C. (301 aa)
fdxB4Fe-4S ferredoxin, iron-sulfur binding protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (98 aa)
Ava_4831Isocitrate dehydrogenase (NADP). (473 aa)
Your Current Organism:
Trichormus variabilis
NCBI taxonomy Id: 240292
Other names: Anabaena flos-aquae A-37, Anabaena flos-aquae UTCC 67, Anabaena sp. CCALA 007, Anabaena sp. PCC 7937, Anabaena variabilis ATCC 29413, Anabaena variabilis IAM M-204, Anabaena variabilis NIES-2095, Anabaena variabilis UTCC 105, Nostoc sp. PCC 7937, T. variabilis ATCC 29413, Trichormus variabilis ATCC 29413
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.