(29 nodes) ATP-binding cassette (ABC) transporter complex network (Trichormus variabilis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Ava_1451	ABC-2. (258 aa)
	cysA	Sulphate transport system permease protein 1; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system. (338 aa)
	Ava_1509	Extracellular solute-binding protein, family 5. (539 aa)
	Ava_0086	Conserved hypothetical protein. (174 aa)
	Ava_0179	Phosphonate-binding periplasmic protein. (324 aa)
	Ava_0192	ABC-2. (295 aa)
	Ava_0687	ABC-2. (275 aa)
	Ava_0738	General L-amino acid transport system permease protein; Neutral amino acid ABC transporter membrane protein / L-glutamate ABC transporter membrane protein / L-aspartate ABC transporter membrane protein. (381 aa)
	Ava_1563	Extracellular solute-binding protein, family 5. (588 aa)
	Ava_1599	ABC-3. (281 aa)
	Ava_1600	ABC transporter-like protein. (265 aa)
	Ava_1638	ABC transporter-like protein. (242 aa)
	Ava_1687	Protein of unknown function DUF140; Belongs to the MlaE permease family. (263 aa)
	Ava_1753	ABC transporter-like protein. (230 aa)
	Ava_1754	Cobalt transport protein. (216 aa)
	cbiM	Cobalamin (vitamin B12) biosynthesis CbiM protein; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import. (258 aa)
	Ava_1810	Extracellular solute-binding protein, family 5. (595 aa)
	Ava_2050	Carbohydrate ABC transporter ATP-binding protein, CUT1 family; TC 3.A.1.1.-; Belongs to the ABC transporter superfamily. (439 aa)
	potA	Spermidine/putrescine ABC transporter ATP-binding subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family. (381 aa)
	Ava_2477	Phosphate ABC transporter substrate-binding protein, PhoT family; TC 3.A.1.7.1; Belongs to the PstS family. (393 aa)
	Ava_2959	Substrate-binding region of ABC-type glycine betaine transport system. (302 aa)
	Ava_3346	ABC-2. (268 aa)
	Ava_3886	ABC transmembrane type-1 domain-containing protein; L-arginine ABC transporter membrane protein / L-glutamine ABC transporter membrane protein / L-arginine-binding protein / L-histidine-binding protein / L-histidine ABC transporter membrane protein / L-lysine-binding protein / L-lysine ABC transporter membrane protein / L-glutamine-binding protein. (501 aa)
	Ava_4150	ABC-2. (261 aa)
	Ava_4304	Phosphonate-binding periplasmic protein. (348 aa)
	Ava_4436	ABC-3. (294 aa)
	Ava_4516	Phosphate ABC transporter substrate-binding protein, PhoT family; TC 3.A.1.7.1; Belongs to the PstS family. (347 aa)
	Ava_4829	Carbohydrate ABC transporter ATP-binding protein, CUT1 family; TC 3.A.1.1.-; Belongs to the ABC transporter superfamily. (366 aa)
	Ava_5014	ABC-type phosphate/phosphonate transport system periplasmic component-like protein. (266 aa)

Your Current Organism:

Trichormus variabilis

NCBI taxonomy Id: 240292
Other names: Anabaena flos-aquae A-37, Anabaena flos-aquae UTCC 67, Anabaena sp. CCALA 007, Anabaena sp. PCC 7937, Anabaena variabilis ATCC 29413, Anabaena variabilis IAM M-204, Anabaena variabilis NIES-2095, Anabaena variabilis UTCC 105, Nostoc sp. PCC 7937, T. variabilis ATCC 29413, Trichormus variabilis ATCC 29413

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ava_0179	Ava_0738	Ava_0179	Ava_0738	Phosphonate-binding periplasmic protein.	General L-amino acid transport system permease protein; Neutral amino acid ABC transporter membrane protein / L-glutamate ABC transporter membrane protein / L-aspartate ABC transporter membrane protein.	0.435
Ava_0179	Ava_4304	Ava_0179	Ava_4304	Phosphonate-binding periplasmic protein.	Phosphonate-binding periplasmic protein.	0.925
Ava_0192	Ava_0687	Ava_0192	Ava_0687	ABC-2.	ABC-2.	0.456
Ava_0192	Ava_1599	Ava_0192	Ava_1599	ABC-2.	ABC-3.	0.453
Ava_0192	Ava_4150	Ava_0192	Ava_4150	ABC-2.	ABC-2.	0.532
Ava_0192	Ava_4436	Ava_0192	Ava_4436	ABC-2.	ABC-3.	0.473
Ava_0687	Ava_0192	Ava_0687	Ava_0192	ABC-2.	ABC-2.	0.456
Ava_0687	Ava_4150	Ava_0687	Ava_4150	ABC-2.	ABC-2.	0.481
Ava_0738	Ava_0179	Ava_0738	Ava_0179	General L-amino acid transport system permease protein; Neutral amino acid ABC transporter membrane protein / L-glutamate ABC transporter membrane protein / L-aspartate ABC transporter membrane protein.	Phosphonate-binding periplasmic protein.	0.435
Ava_0738	Ava_1599	Ava_0738	Ava_1599	General L-amino acid transport system permease protein; Neutral amino acid ABC transporter membrane protein / L-glutamate ABC transporter membrane protein / L-aspartate ABC transporter membrane protein.	ABC-3.	0.429
Ava_0738	Ava_1638	Ava_0738	Ava_1638	General L-amino acid transport system permease protein; Neutral amino acid ABC transporter membrane protein / L-glutamate ABC transporter membrane protein / L-aspartate ABC transporter membrane protein.	ABC transporter-like protein.	0.456
Ava_0738	Ava_3886	Ava_0738	Ava_3886	General L-amino acid transport system permease protein; Neutral amino acid ABC transporter membrane protein / L-glutamate ABC transporter membrane protein / L-aspartate ABC transporter membrane protein.	ABC transmembrane type-1 domain-containing protein; L-arginine ABC transporter membrane protein / L-glutamine ABC transporter membrane protein / L-arginine-binding protein / L-histidine-binding protein / L-histidine ABC transporter membrane protein / L-lysine-binding protein / L-lysine ABC transporter membrane protein / L-glutamine-binding protein.	0.699
Ava_0738	Ava_4304	Ava_0738	Ava_4304	General L-amino acid transport system permease protein; Neutral amino acid ABC transporter membrane protein / L-glutamate ABC transporter membrane protein / L-aspartate ABC transporter membrane protein.	Phosphonate-binding periplasmic protein.	0.442
Ava_0738	Ava_4436	Ava_0738	Ava_4436	General L-amino acid transport system permease protein; Neutral amino acid ABC transporter membrane protein / L-glutamate ABC transporter membrane protein / L-aspartate ABC transporter membrane protein.	ABC-3.	0.429
Ava_1451	Ava_1509	Ava_1451	Ava_1509	ABC-2.	Extracellular solute-binding protein, family 5.	0.485
Ava_1451	Ava_3346	Ava_1451	Ava_3346	ABC-2.	ABC-2.	0.474
Ava_1451	Ava_3886	Ava_1451	Ava_3886	ABC-2.	ABC transmembrane type-1 domain-containing protein; L-arginine ABC transporter membrane protein / L-glutamine ABC transporter membrane protein / L-arginine-binding protein / L-histidine-binding protein / L-histidine ABC transporter membrane protein / L-lysine-binding protein / L-lysine ABC transporter membrane protein / L-glutamine-binding protein.	0.457
Ava_1509	Ava_1451	Ava_1509	Ava_1451	Extracellular solute-binding protein, family 5.	ABC-2.	0.485
Ava_1509	Ava_1563	Ava_1509	Ava_1563	Extracellular solute-binding protein, family 5.	Extracellular solute-binding protein, family 5.	0.424
Ava_1509	Ava_1810	Ava_1509	Ava_1810	Extracellular solute-binding protein, family 5.	Extracellular solute-binding protein, family 5.	0.538

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