(26 nodes) ATP-binding cassette (ABC) transporter complex network (Trichormus variabilis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Ava_2094	Carbohydrate ABC transporter membrane protein 2, CUT1 family; TC 3.A.1.1.-. (279 aa)
	Ava_4712	Sulfate ABC transporter, permease protein CysW. (291 aa)
	Ava_0177	Phosphonate uptake transporter. (264 aa)
	Ava_0461	Carbohydrate ABC transporter membrane protein 1, CUT1 family; TC 3.A.1.1.-. (301 aa)
	Ava_0563	Carbohydrate ABC transporter membrane protein 1, CUT1 family; TC 3.A.1.1.-. (294 aa)
	Ava_1600	ABC transporter-like protein. (265 aa)
	Ava_1637	Permease YjgP/YjgQ. (391 aa)
	Ava_1638	ABC transporter-like protein. (242 aa)
	Ava_1687	Protein of unknown function DUF140; Belongs to the MlaE permease family. (263 aa)
	Ava_1753	ABC transporter-like protein. (230 aa)
	Ava_1755	Cobalamin (vitamin B12) biosynthesis CbiM protein. (306 aa)
	Ava_1756	Cobalt transport protein ATP-binding subunit; Part of an ABC transporter complex. Responsible for energy coupling to the transport system. (274 aa)
	cbiN	Cobalt transport protein CbiN; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import; Belongs to the CbiN family. (100 aa)
	cbiM	Cobalamin (vitamin B12) biosynthesis CbiM protein; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import. (258 aa)
	Ava_2050	Carbohydrate ABC transporter ATP-binding protein, CUT1 family; TC 3.A.1.1.-; Belongs to the ABC transporter superfamily. (439 aa)
	potA	Spermidine/putrescine ABC transporter ATP-binding subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family. (381 aa)
	Ava_2514	ABC transporter-like protein. (225 aa)
	Ava_2532	Carbohydrate ABC transporter membrane protein 2, CUT1 family; TC 3.A.1.1.-. (275 aa)
	Ava_2599	Nucleoside ABC transporter ATP-binding protein. (491 aa)
	Ava_2748	Carbohydrate ABC transporter membrane protein 2, CUT1 family; TC 3.A.1.1.-. (306 aa)
	Ava_2959	Substrate-binding region of ABC-type glycine betaine transport system. (302 aa)
	Ava_3346	ABC-2. (268 aa)
	Ava_4438	ABC transporter-like protein. (257 aa)
	Ava_4638	Carbohydrate ABC transporter membrane protein 1, CUT1 family; TC 3.A.1.1.-. (308 aa)
	Ava_4829	Carbohydrate ABC transporter ATP-binding protein, CUT1 family; TC 3.A.1.1.-; Belongs to the ABC transporter superfamily. (366 aa)
	Ava_4987	ABC transporter-like protein. (224 aa)

Your Current Organism:

Trichormus variabilis

NCBI taxonomy Id: 240292
Other names: Anabaena flos-aquae A-37, Anabaena flos-aquae UTCC 67, Anabaena sp. CCALA 007, Anabaena sp. PCC 7937, Anabaena variabilis ATCC 29413, Anabaena variabilis IAM M-204, Anabaena variabilis NIES-2095, Anabaena variabilis UTCC 105, Nostoc sp. PCC 7937, T. variabilis ATCC 29413, Trichormus variabilis ATCC 29413

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ava_0461	Ava_2050	Ava_0461	Ava_2050	Carbohydrate ABC transporter membrane protein 1, CUT1 family; TC 3.A.1.1.-.	Carbohydrate ABC transporter ATP-binding protein, CUT1 family; TC 3.A.1.1.-; Belongs to the ABC transporter superfamily.	0.985
Ava_0461	Ava_2094	Ava_0461	Ava_2094	Carbohydrate ABC transporter membrane protein 1, CUT1 family; TC 3.A.1.1.-.	Carbohydrate ABC transporter membrane protein 2, CUT1 family; TC 3.A.1.1.-.	0.950
Ava_0461	Ava_2532	Ava_0461	Ava_2532	Carbohydrate ABC transporter membrane protein 1, CUT1 family; TC 3.A.1.1.-.	Carbohydrate ABC transporter membrane protein 2, CUT1 family; TC 3.A.1.1.-.	0.950
Ava_0461	Ava_2748	Ava_0461	Ava_2748	Carbohydrate ABC transporter membrane protein 1, CUT1 family; TC 3.A.1.1.-.	Carbohydrate ABC transporter membrane protein 2, CUT1 family; TC 3.A.1.1.-.	0.976
Ava_0461	Ava_4829	Ava_0461	Ava_4829	Carbohydrate ABC transporter membrane protein 1, CUT1 family; TC 3.A.1.1.-.	Carbohydrate ABC transporter ATP-binding protein, CUT1 family; TC 3.A.1.1.-; Belongs to the ABC transporter superfamily.	0.975
Ava_0563	Ava_2050	Ava_0563	Ava_2050	Carbohydrate ABC transporter membrane protein 1, CUT1 family; TC 3.A.1.1.-.	Carbohydrate ABC transporter ATP-binding protein, CUT1 family; TC 3.A.1.1.-; Belongs to the ABC transporter superfamily.	0.975
Ava_0563	Ava_2094	Ava_0563	Ava_2094	Carbohydrate ABC transporter membrane protein 1, CUT1 family; TC 3.A.1.1.-.	Carbohydrate ABC transporter membrane protein 2, CUT1 family; TC 3.A.1.1.-.	0.950
Ava_0563	Ava_2532	Ava_0563	Ava_2532	Carbohydrate ABC transporter membrane protein 1, CUT1 family; TC 3.A.1.1.-.	Carbohydrate ABC transporter membrane protein 2, CUT1 family; TC 3.A.1.1.-.	0.950
Ava_0563	Ava_2748	Ava_0563	Ava_2748	Carbohydrate ABC transporter membrane protein 1, CUT1 family; TC 3.A.1.1.-.	Carbohydrate ABC transporter membrane protein 2, CUT1 family; TC 3.A.1.1.-.	0.950
Ava_0563	Ava_4829	Ava_0563	Ava_4829	Carbohydrate ABC transporter membrane protein 1, CUT1 family; TC 3.A.1.1.-.	Carbohydrate ABC transporter ATP-binding protein, CUT1 family; TC 3.A.1.1.-; Belongs to the ABC transporter superfamily.	0.975
Ava_1637	Ava_1638	Ava_1637	Ava_1638	Permease YjgP/YjgQ.	ABC transporter-like protein.	0.999
Ava_1637	Ava_1687	Ava_1637	Ava_1687	Permease YjgP/YjgQ.	Protein of unknown function DUF140; Belongs to the MlaE permease family.	0.653
Ava_1638	Ava_1637	Ava_1638	Ava_1637	ABC transporter-like protein.	Permease YjgP/YjgQ.	0.999
Ava_1638	Ava_1687	Ava_1638	Ava_1687	ABC transporter-like protein.	Protein of unknown function DUF140; Belongs to the MlaE permease family.	0.753
Ava_1687	Ava_1637	Ava_1687	Ava_1637	Protein of unknown function DUF140; Belongs to the MlaE permease family.	Permease YjgP/YjgQ.	0.653
Ava_1687	Ava_1638	Ava_1687	Ava_1638	Protein of unknown function DUF140; Belongs to the MlaE permease family.	ABC transporter-like protein.	0.753
Ava_1687	potA	Ava_1687	Ava_2303	Protein of unknown function DUF140; Belongs to the MlaE permease family.	Spermidine/putrescine ABC transporter ATP-binding subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.	0.404
Ava_1753	Ava_1755	Ava_1753	Ava_1755	ABC transporter-like protein.	Cobalamin (vitamin B12) biosynthesis CbiM protein.	0.988
Ava_1753	Ava_1756	Ava_1753	Ava_1756	ABC transporter-like protein.	Cobalt transport protein ATP-binding subunit; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	0.938
Ava_1753	cbiM	Ava_1753	Ava_1759	ABC transporter-like protein.	Cobalamin (vitamin B12) biosynthesis CbiM protein; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import.	0.933

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