STRINGSTRING
Ava_0214 Ava_0214 Ava_0523 Ava_0523 Ava_0936 Ava_0936 Ava_1080 Ava_1080 Ava_2035 Ava_2035 Ava_2258 Ava_2258 Ava_2757 Ava_2757 nifJ nifJ Ava_3533 Ava_3533 Ava_3534 Ava_3534 Ava_3648 Ava_3648 Ava_4999 Ava_4999
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Ava_02144-aminobutyrate aminotransferase apoenzyme; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (431 aa)
Ava_0523Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (330 aa)
Ava_0936Succinate dehydrogenase subunit A. (578 aa)
Ava_1080Ferredoxin (flavodoxin) oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin. (1190 aa)
Ava_2035Acetolactate synthase, small subunit. (182 aa)
Ava_2258Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (473 aa)
Ava_2757Acetolactate synthase, large subunit. (632 aa)
nifJFerredoxin (flavodoxin) oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. (1190 aa)
Ava_3533Acetolactate synthase, large subunit; Belongs to the TPP enzyme family. (547 aa)
Ava_3534Aldehyde dehydrogenase. (455 aa)
Ava_3648Succinate dehydrogenase subunit C. (301 aa)
Ava_4999Asp/Glu racemase. (249 aa)
Your Current Organism:
Trichormus variabilis
NCBI taxonomy Id: 240292
Other names: Anabaena flos-aquae A-37, Anabaena flos-aquae UTCC 67, Anabaena sp. CCALA 007, Anabaena sp. PCC 7937, Anabaena variabilis ATCC 29413, Anabaena variabilis IAM M-204, Anabaena variabilis NIES-2095, Anabaena variabilis UTCC 105, Nostoc sp. PCC 7937, T. variabilis ATCC 29413, Trichormus variabilis ATCC 29413
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