29 items (Pyricularia oryzae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MGG_02183	Helicase swr-1. (1912 aa)
	MGG_06717	MRG domain-containing protein. (323 aa)
	MGG_06716	Tudor-knot domain-containing protein. (199 aa)
	MGG_05587	Actin-like protein arp-6; Belongs to the actin family. (478 aa)
	MGG_14558	SANT domain-containing protein. (2305 aa)
	MGG_02240	Uncharacterized protein. (1147 aa)
	MGG_04517	Uncharacterized protein. (889 aa)
	MGG_01558	SET domain-containing protein. (945 aa)
	MGG_01633	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (496 aa)
	MGG_10164	PHD-type domain-containing protein. (822 aa)
	MGG_07323	Histone acetyltransferase type B subunit 2. (436 aa)
	MGG_11256	Actl6a protein; Belongs to the actin family. (509 aa)
	MGG_08095	SWR1-complex protein 4. (656 aa)
	MGG_05857	Histone deacetylase RPD3. (659 aa)
	MGG_05178	AF-9. (263 aa)
	MGG_12827	YL1_C domain-containing protein. (862 aa)
	MGG_06385	SWR1-complex protein 5. (344 aa)
	MGG_06317	PHD-type domain-containing protein. (1396 aa)
	MGG_03198	Uncharacterized protein. (678 aa)
	MGG_12758	Uncharacterized protein. (544 aa)
	MGG_03173	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. (470 aa)
	MGG_01076	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. (758 aa)
	MGG_01035	RXT2_N domain-containing protein. (507 aa)
	MGG_00332	Uncharacterized protein. (273 aa)
	MGG_00736	Chromodomain helicase DNA binding protein 1. (1649 aa)
	MGG_03958	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. (459 aa)
	MGG_12109	Chromatin modification-related protein. (773 aa)
	MGG_02701	Uncharacterized protein. (1112 aa)
	MGG_02535	PHD domain-containing protein. (660 aa)

Your Current Organism:

Pyricularia oryzae

NCBI taxonomy Id: 242507
Other names: Magnaporthe grisea 70-15, P. oryzae 70-15, Pyricularia oryzae 70-15

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MGG_00736	MGG_01076	G4NEV5	G4NCI1	Chromodomain helicase DNA binding protein 1.	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	0.684
MGG_00736	MGG_01633	G4NEV5	G4MUC7	Chromodomain helicase DNA binding protein 1.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.911
MGG_00736	MGG_03958	G4NEV5	G4NH29	Chromodomain helicase DNA binding protein 1.	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	0.467
MGG_00736	MGG_05857	G4NEV5	G4N3Q0	Chromodomain helicase DNA binding protein 1.	Histone deacetylase RPD3.	0.911
MGG_00736	MGG_06716	G4NEV5	G4ML79	Chromodomain helicase DNA binding protein 1.	Tudor-knot domain-containing protein.	0.492
MGG_00736	MGG_06717	G4NEV5	G4ML80	Chromodomain helicase DNA binding protein 1.	MRG domain-containing protein.	0.492
MGG_00736	MGG_07323	G4NEV5	G4MV16	Chromodomain helicase DNA binding protein 1.	Histone acetyltransferase type B subunit 2.	0.977
MGG_00736	MGG_12758	G4NEV5	G4NAC8	Chromodomain helicase DNA binding protein 1.	Uncharacterized protein.	0.613
MGG_01035	MGG_01633	G4NCT0	G4MUC7	RXT2_N domain-containing protein.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.466
MGG_01035	MGG_02183	G4NCT0	G4MP79	RXT2_N domain-containing protein.	Helicase swr-1.	0.426
MGG_01035	MGG_02240	G4NCT0	G4MPP9	RXT2_N domain-containing protein.	Uncharacterized protein.	0.791
MGG_01035	MGG_02535	G4NCT0	G4NK43	RXT2_N domain-containing protein.	PHD domain-containing protein.	0.864
MGG_01035	MGG_05857	G4NCT0	G4N3Q0	RXT2_N domain-containing protein.	Histone deacetylase RPD3.	0.798
MGG_01035	MGG_06317	G4NCT0	G4N848	RXT2_N domain-containing protein.	PHD-type domain-containing protein.	0.468
MGG_01035	MGG_06716	G4NCT0	G4ML79	RXT2_N domain-containing protein.	Tudor-knot domain-containing protein.	0.453
MGG_01035	MGG_06717	G4NCT0	G4ML80	RXT2_N domain-containing protein.	MRG domain-containing protein.	0.453
MGG_01035	MGG_07323	G4NCT0	G4MV16	RXT2_N domain-containing protein.	Histone acetyltransferase type B subunit 2.	0.525
MGG_01035	MGG_10164	G4NCT0	G4MUM3	RXT2_N domain-containing protein.	PHD-type domain-containing protein.	0.838
MGG_01076	MGG_00736	G4NCI1	G4NEV5	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	Chromodomain helicase DNA binding protein 1.	0.684
MGG_01076	MGG_01633	G4NCI1	G4MUC7	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.728